Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i15
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    64   1e-10
Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    28   9.5  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
 Frame = -3

Query: 606 ETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGH---GLLDIPVLSPF-LHKSV 439
           E +  +IIVG+G+AG V+A+R+  + +   +++EAG   H     + +P    + L    
Sbjct: 35  ENKPTHIIVGAGSAGCVLANRLTEDPSNRVLLIEAGPVDHKWDWRIHMPAALMYNLCSDT 94

Query: 438 YDWNYETSPQENACWGMVDHKCRLPQGKIVGGSSKLNNMVHVRGNISHYAVW 283
           Y+W+Y T+ Q+N    + +     P+G++ GGSS LN M +VRG+   Y  W
Sbjct: 95  YNWHYHTTAQKN----LGNRVFYWPRGRVWGGSSTLNAMCYVRGHAYDYNRW 142


>Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical
           protein W04D2.3 protein.
          Length = 465

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 714 TVYNFSYFSVCVHIVTLFTYIIYYSDIFASIYL 616
           T  NF Y S  +  + LFT ++Y+ ++FA +YL
Sbjct: 187 TFLNFQYSSGFISWIYLFTKVLYFLNVFAQLYL 219


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 600 EYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKG 490
           E+DY+++G G+ G   A R A E   +  ++E+G  G
Sbjct: 6   EFDYLVIGGGSGGIASARR-AREFGVSVGLIESGRLG 41


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 600 EYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKG 490
           E+DY+++G G+ G   A R A E   +  ++E+G  G
Sbjct: 20  EFDYLVIGGGSGGIASARR-AREFGVSVGLIESGRLG 55


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 642 SDIFASIYLKTVETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKG 490
           SD+  SI   +        ++GSG AGS +A+ +        ++LE  S G
Sbjct: 13  SDLHTSIRNSSSTKHVFACVLGSGVAGSSVAYHLTKRNIKDVLLLERASDG 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,374,559
Number of Sequences: 27780
Number of extensions: 434005
Number of successful extensions: 1036
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)