Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16i01
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 38 0.002
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.44
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 29 0.58
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 29 0.58
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 29 0.58
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 29 0.77
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 29 0.77
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 29 1.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 1.0
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 28 1.3
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 28 1.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 28 1.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 1.8
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.1
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 3.1
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 27 4.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 4.1
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 26 5.4
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 7.1
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 26 7.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 9.4
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 9.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.4
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch... 25 9.4
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 9.4
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 9.4
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.4
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.4
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 9.4
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = -1
Query: 464 YKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEE 285
Y I+ +L+ IS E C +N ++ LEA+L+ + H D T + + +EE
Sbjct: 635 YNMILNLLRVEG-ISPEFMLERCFFQFQNSLEVPKLEAKLEESQQHYDSFTILDERPLEE 693
Query: 284 NTRLNEQVQELQRQVRTL 231
L Q++ + VRT+
Sbjct: 694 YHTLKTQLERYRTDVRTV 711
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.9 bits (64), Expect = 0.44
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -1
Query: 653 CDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKMWRSLKPNAVVTCKFYKKTQERVPA 474
C H FC C+I LQ ++ CPLC + ++ ++ N + KT
Sbjct: 375 CSHVFCLHCLIILQKQKVDF------CPLCRAK-EVMKADSRNIDHALMNFMKTYFPREI 427
Query: 473 VQQYKNIIKVLQERSVISVENSDNNCDI 390
++++ S ISV + NNC I
Sbjct: 428 KEKFEENENDTFTPSSISVVSGQNNCVI 455
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -1
Query: 311 SENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDRAPAELNER 156
S+ +QL++E +LN Q +V +LA ++ + +N ++ R R + LNE+
Sbjct: 222 SQLQQLVQEIKKLNNQTFSTPIRVVSLASRKNLCINNEV-RKLRPTSALNEK 272
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/85 (20%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Frame = -1
Query: 497 KTQERVPAVQQYKNIIKV------LQERSVISVENSDNNCDINMENQAKIVALEAELKNE 336
K +E++ A+ Y+++ Q++ + +N + ++ + ++ ++VALE+ E
Sbjct: 23 KEKEKINAINTYEDVANSEDEFYNAQDKILFDADNGEQADELELSDE-ELVALESSSDEE 81
Query: 335 KNHSDQVTSENRQLI-EENTRLNEQ 264
++++ SEN +L ++ +NE+
Sbjct: 82 DGNAEENLSENEELSGKKKDAVNEE 106
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = -1
Query: 401 NCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTL 231
NC + + NQ + + + NH D V ++ + +++EN RL EQ+ L+ +++ L
Sbjct: 583 NCGLLLPNQVSMPNISNIVST--NHLD-VETQMKLIMDENQRLREQIAVLRSRIQHL 636
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 29.1 bits (62), Expect = 0.77
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Frame = -1
Query: 476 AVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQ--VTSEN 303
A + + + IK L + + + D ++ + +L + K+ ++ + S
Sbjct: 303 AEEHFSHKIKELTSENELKISRLQEEKDSLLKKVQEGASLAMQRVQNKHDLEKKRLQSAI 362
Query: 302 RQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDR-APAELNERFRSLVYSTIS 126
+ L EEN L +Q+++LQR+ LA + + N + D + A + E + STI
Sbjct: 363 QPLQEENNSLKQQIEQLQRE---LASETVVKENLKSSLDQQSANVQKLESTNRALESTIK 419
Query: 125 ELFIENRVHSIQNYV 81
L E V++++N +
Sbjct: 420 TL--EEDVYTMKNKI 432
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.1 bits (62), Expect = 0.77
Identities = 25/109 (22%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Frame = -1
Query: 392 INMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGI 213
+ ++ +V +A + E+ + V + + E+ T +E V+ R+V+ L +
Sbjct: 487 VRLDLHGILVVEQAYIVEEQEVEEPVETSPEEEAEKKT--DEPVK--MRKVKKLVKVADL 542
Query: 212 TVNPQIGRDDRAPAELNERFRSLVYSTIS--ELFIE--NRVHSIQNYVY 78
+V+ Q +DR P E+ E++R + I+ +L E +R ++++ Y+Y
Sbjct: 543 SVSVQ---EDRLPTEVLEKYREAEHQMIATDKLVAETVDRKNALEEYIY 588
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 28.7 bits (61), Expect = 1.0
Identities = 33/146 (22%), Positives = 62/146 (42%)
Frame = -1
Query: 560 TQVKMWRSLKPNAVVTCKFYKKTQERVPAVQQYKNIIKVLQERSVISVENSDNNCDINME 381
T +WR N C F + T R + ++K I + S ++ E+ ++
Sbjct: 586 TSSTIWRHKLENGYRLCDF-RGTLLREEMIGEFKQFIWRPRPPSPLTKEDM-KKIRKKLK 643
Query: 380 NQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNP 201
+ ++ E ++ + + + ++ + RQLI E + ++V + +A +R IT P
Sbjct: 644 DYNRLFD-EEDIAEQSSANRELAARRRQLISEWQKYRDEV------IARVAEERAITGQP 696
Query: 200 QIGRDDRAPAELNERFRSLVYSTISE 123
I PAE E + V ISE
Sbjct: 697 AI----TVPAEEEEIIQETVEEVISE 718
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 365 VALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQ 243
+AL+ ELKN D ++S N+Q T+L E+++ L+R+
Sbjct: 935 LALQDELKNRNLLMDDISSYNKQ----TTKLQEKIKWLERE 971
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 299 VGFQ--KLLDHCDFFRSLIQLPKQLFLPDSPYLCH 397
+GFQ K+ D+F L +L ++L D Y+CH
Sbjct: 324 LGFQPYKITYSSDYFDKLYELAEELIKRDKAYVCH 358
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/80 (20%), Positives = 39/80 (48%)
Frame = -1
Query: 362 ALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDD 183
++ AE+K K S+ + ++ + ++ ++ Q+ + +LAP + N Q
Sbjct: 794 SMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQ----Q 849
Query: 182 RAPAELNERFRSLVYSTISE 123
++P E ++ R Y+++ E
Sbjct: 850 KSPVEKPKKLRKDRYASVEE 869
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 350 ELKNEKNHSDQV--TSENRQLIEENTRLNEQVQELQRQVRTL 231
EL N K+++ V RQL+EEN L+ +V +L +++ L
Sbjct: 390 ELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQDL 431
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 347 LKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQ 198
L++ + Q + +Q ++ + +Q Q+ Q+Q + APQ NPQ
Sbjct: 253 LQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 653 CDHGFCFKCVIDLQSNAMNIPHSIVCCP 570
CDH FC C + ++ S++ CP
Sbjct: 147 CDHEFCLACYRQYLDSRISEGESVIQCP 174
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 659 TTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVK 549
T C H +C+ C++ N V CP+C +++
Sbjct: 211 TDCGHTYCYACIMSRLKLVNN-----VSCPICKHRIR 242
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 318 LITVIFFVL*FSFQSNYFCLILHIYVTIVVAVFDTNHAP 434
L+ +FF++ F S F LILH+ V V VF H P
Sbjct: 16 LVLRLFFLVVFGLYS--FTLILHLLVINRVDVFSLLHTP 52
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 698 LNNLTILVLFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCN 561
L N TI +L L ++ FC ++D + +N +C P C+
Sbjct: 791 LGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLNYNLQALCGPKCS 836
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -1
Query: 392 INMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQR-- 219
++ Q+ + +L+ ++ NEK + S+ +L E + L Q+ TLA ++
Sbjct: 505 VSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGELQTEISNSEHLSSQLSTLAAEKEA 564
Query: 218 GITVNPQIGRDDRAPAELNERFRSLVYSTISEL 120
+ N ++ + L F+ + ++ +L
Sbjct: 565 AVATNNELSESKNSLQTLCNAFQEKLAKSVMQL 597
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = -1
Query: 461 KNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEEN 282
K + L+E + +IN E + ++ K E++ + S + +L E++
Sbjct: 423 KQVSSQLEEARSSLAHATGKLAEINSERDFQNKKIKDFEKIEQDLRACLNSSSNELKEKS 482
Query: 281 TRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDRAPAELNERFRSLVY-STISEL 120
++++ QEL + Q+ ++ + Q LNE+ + VY S ++EL
Sbjct: 483 ALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNEL 537
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 356 EAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNP 201
E E + E+N +D T EN++ +N + E + EL+ ++ NP
Sbjct: 316 EEEEEEEENEADDETRENKR---QNRLVREFISELESSIQKRRKDADEATNP 364
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 7.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 665 IPTTCDHGFCFKCV 624
I + C HGFC++C+
Sbjct: 639 IISLCGHGFCYQCI 652
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -1
Query: 431 SVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQEL 252
S I+ EN+D++ + + ++ A AEL+++ ++ + N +L+EE E +
Sbjct: 158 SHINKENADDSLIQQLYERIELQA--AELRSKDEQVKELNARNAKLLEELDSSEEACKSC 215
Query: 251 QRQVRT 234
Q +T
Sbjct: 216 YTQAKT 221
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -1
Query: 416 ENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQEL 252
E++ N D++ E++A+ LE+++ S +EN EEN L+E+V ++
Sbjct: 3940 EDTANQSDLD-ESEAR--ELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDI 3991
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -1
Query: 356 EAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDRA 177
E + N + + SEN ++IEE+ + E Q QV + + QI D A
Sbjct: 372 EPIIVNNDDENGNNESENEEVIEEDNLNRNVIAEAQNQVVADEERNAVARAAQIAEADDA 431
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -1
Query: 413 NSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRT 234
N +N ++ A ++ EK +NR+ +EE + ELQ+ R
Sbjct: 358 NEENEETPEYDSSNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERP 417
Query: 233 LAPQR 219
LA Q+
Sbjct: 418 LAKQQ 422
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 9.4
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Frame = -1
Query: 479 PAVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENR 300
P+ + N + ++ S + D N +K + E EK S++ ++ N+
Sbjct: 46 PSGVEPTNTSRANAQKKTESTGKITSEADTEKYNSSKS-PVNKEGSVEKKSSEKSSTNNK 104
Query: 299 QLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDRAPAE-LNERFRS 147
+NT +R T + + + QIG+D+ AP E +NE+ S
Sbjct: 105 PWRGDNTSKPSANSSAER---TSSQHQKPETSSQIGKDNAAPVENVNEKSTS 153
>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 321
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 705 FRNTHCTQI*N*LPALSLIPPSFAAVLFVW 794
+ + C + LPAL+ P +F+A+L VW
Sbjct: 78 YATSDCNTLEYLLPALAQSPYNFSAILGVW 107
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 665 IPTTCDHGFCFKCVI 621
I TTC H FC +C I
Sbjct: 265 IATTCGHHFCEQCAI 279
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.4 bits (53), Expect = 9.4
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Frame = -1
Query: 695 NNLTILVLFLIPTTCDHGFCFKCVIDLQSNAMNIPHSI-----------VCCPLCNTQVK 549
N L++L+ FL P T D C+ ID+ S+ NI S+ C L T +K
Sbjct: 48 NWLSLLLRFL-PETTDPE-CYIPYIDIDSHYGNIKASVNDIEPIVLPDEELCQLRLTNMK 105
Query: 548 MWR----SLKPNAVVTCKFYKKTQERVPAVQQYKNIIKVLQERSVISVENS 408
+W SLK A F KK E V + K Q + I NS
Sbjct: 106 LWNCKLPSLKDEAEFYSLFSKKIVEETDLVDLAYQLTKNSQAPAEIQQWNS 156
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 347 LKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDRA-PA 171
LK+ + ++ E +I+E + + L+ ++ T R + +IG D+R +
Sbjct: 786 LKSLSGQIENLSHEFDAIIKERAHIEARKTALEYELNTNLYLRRNPLKAEIGSDNRIDES 845
Query: 170 ELNERFRSLV 141
ELN RSL+
Sbjct: 846 ELNSVKRSLL 855
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = -1
Query: 497 KTQERVPAVQQYKNIIKVLQERSVI--SVENSDNNCDINMENQAKI-VALEAELKNEKNH 327
+T ++P ++ + +VLQ ++++ S E+S + ++Q I V+ +L+N+
Sbjct: 527 ETNLKIPIPEKKRKFQEVLQSKNILVSSTEDSHEPVKVTEDSQTAIHVSKFEDLENKSME 586
Query: 326 SDQ 318
S+Q
Sbjct: 587 SEQ 589
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = -1
Query: 392 INMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGI 213
IN++ K ALE++ KNE++ S+ E+ ++ E++ +++ +V T Q
Sbjct: 5 INLDELRK-KALESKKKNEEDESNDSDKEDGEISEDDPVIDQSNSVPPMKVPTFPEQ--- 60
Query: 212 TVNPQIGRDDRAP 174
PQ+ DR P
Sbjct: 61 --IPQLPPFDRFP 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,643
Number of Sequences: 5004
Number of extensions: 60900
Number of successful extensions: 251
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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