Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16h18
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 386 e-108
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 386 e-108
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 386 e-108
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 68 2e-12
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.31
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.2
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.2
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.6
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 386 bits (949), Expect = e-108
Identities = 173/241 (71%), Positives = 208/241 (86%)
Frame = -3
Query: 750 RVIRAQRKGAGSVFVSHTKKRKGAXKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVH 571
RVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V
Sbjct: 3 RVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVA 61
Query: 570 FRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGD 391
FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GD
Sbjct: 62 FRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGD 121
Query: 390 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 211
RG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKA
Sbjct: 122 RGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKA 181
Query: 210 GRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARR 31
GRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAARR
Sbjct: 182 GRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARR 241
Query: 30 T 28
T
Sbjct: 242 T 242
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 386 bits (949), Expect = e-108
Identities = 173/241 (71%), Positives = 208/241 (86%)
Frame = -3
Query: 750 RVIRAQRKGAGSVFVSHTKKRKGAXKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVH 571
RVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V
Sbjct: 3 RVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVA 61
Query: 570 FRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGD 391
FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GD
Sbjct: 62 FRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGD 121
Query: 390 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 211
RG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKA
Sbjct: 122 RGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKA 181
Query: 210 GRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARR 31
GRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAARR
Sbjct: 182 GRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARR 241
Query: 30 T 28
T
Sbjct: 242 T 242
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 386 bits (949), Expect = e-108
Identities = 173/241 (71%), Positives = 208/241 (86%)
Frame = -3
Query: 750 RVIRAQRKGAGSVFVSHTKKRKGAXKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVH 571
RVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V
Sbjct: 3 RVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVA 61
Query: 570 FRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGD 391
FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GD
Sbjct: 62 FRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGD 121
Query: 390 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 211
RG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKA
Sbjct: 122 RGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKA 181
Query: 210 GRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARR 31
GRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAARR
Sbjct: 182 GRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARR 241
Query: 30 T 28
T
Sbjct: 242 T 242
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 67.7 bits (158), Expect = 2e-12
Identities = 41/125 (32%), Positives = 69/125 (55%)
Frame = -3
Query: 471 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 292
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 291 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGN 112
+ + ++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HPHGGG
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274
Query: 111 HQHIG 97
+ IG
Sbjct: 275 GKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 245 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 415
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 234 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 142
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 2.2
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +1
Query: 19 ILPGPASS-NKTNFATSRCSSLDSGSL----TYMLMVTTTVRMLYRVHGNTTYIWPAVTF 183
I+P P++S N T +S+++ + T + TTT V+ TT + P
Sbjct: 69 IVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHV 128
Query: 184 DLVLVVCPSSFQNRFVNTSTSSNNTDHAS 270
+ VV P++ VNT+T T HA+
Sbjct: 129 NTTTVVPPTT----HVNTTTVVPPTTHAN 153
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 2.2
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 9/189 (4%)
Frame = +1
Query: 1 SVLPPRILPGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPA 174
S+L + G ASS+ + A SS +GSL Y T V ++ R G ++T + +
Sbjct: 430 SLLRRSSIDGSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSS 489
Query: 175 VTFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLG--SRR*LYSCTLSI--RIV 342
F +S Q +SS + +S + + + G S L S T S+ +
Sbjct: 490 SIFSTATEATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYI 549
Query: 343 SNHSGEVSRGTCQTTSITHFLFKIAHNGT--LRHSSNRHHI-SNFKSCFLSTINKLACVE 513
N S V + + S + T + +S+ + + SN + T++ +
Sbjct: 550 PNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVSSITASG 609
Query: 514 PFGSNEELL 540
S E++
Sbjct: 610 TTSSTSEIV 618
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 386 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 484
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,578
Number of Sequences: 5004
Number of extensions: 73090
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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