Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h18
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   402   e-112
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    37   0.018
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    28   8.2  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    28   8.2  
U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical p...    28   8.2  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  402 bits (991), Expect = e-112
 Identities = 177/241 (73%), Positives = 207/241 (85%)
 Frame = -3

Query: 750 RVIRAQRKGAGSVFVSHTKKRKGAXKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVH 571
           R IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ 
Sbjct: 3   RRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIA 62

Query: 570 FRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGD 391
           FRDPYK+KT K   +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K GD
Sbjct: 63  FRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGD 122

Query: 390 RGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 211
           RG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP+LKA
Sbjct: 123 RGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKA 182

Query: 210 GRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARR 31
           GR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG  STV+R  SAG+KVGLIAARR
Sbjct: 183 GRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARR 242

Query: 30  T 28
           T
Sbjct: 243 T 243


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = -3

Query: 462 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 286
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP   +  
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217

Query: 285 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVK 181
           L  +    VG ++    ID  I  + + + ++  K
Sbjct: 218 LHRTCMATVGRLSHAD-IDGKIFGSAQMHRRFGYK 251


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 708 VSHTKKRKGAXKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 583
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 645 HGYIKGVVKDIIHDPGRGAPLAVVHFR 565
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 645 HGYIKGVVKDIIHDPGRGAPLAVVHFR 565
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 348 IGHNPDAKRTRVKLPSGAKKVL 283
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical
           protein T05F1.8 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 182 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 301
           LT   W+   +FK+ +++ RPPP  +P      L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESLKKKLGIPGTTEVAP 352


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = +3

Query: 189 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 368
           C+C    Q     CQ   +QQQ   C C   A+P   QTV +        C QS  +  Q
Sbjct: 37  CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93

Query: 369 RHVPDDLYHPFSLQDC 416
                    P   Q C
Sbjct: 94  SAPAVSQCQPMCQQQC 109


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = +3

Query: 189 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 368
           C+C    Q     CQ   +QQQ   C C   A+P   QTV +        C QS  +  Q
Sbjct: 37  CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93

Query: 369 RHVPDDLYHPFSLQDC 416
                    P   Q C
Sbjct: 94  SAPAVSQCQPMCQQQC 109


>U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical
           protein C33F10.12 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 182 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 301
           LT   W+   +FK+ +++ RPPP  +P      L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESLKKKLGIPGTTEVAP 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,598,932
Number of Sequences: 27780
Number of extensions: 431981
Number of successful extensions: 1163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)