Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h17
         (808 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro...    31   1.4  
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio...    31   1.4  
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.    31   1.4  
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA...    31   1.4  
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD...    31   1.4  
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB...    31   1.4  
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC...    31   1.4  
AY128414-1|AAM75007.1|  311|Drosophila melanogaster GH04057p pro...    29   5.7  
AE014298-2029|AAF48366.1|  308|Drosophila melanogaster CG9400-PA...    29   5.7  
AY061177-1|AAL28725.1|  101|Drosophila melanogaster LD14555p pro...    29   7.5  
AE014134-2568|AAF53440.2|  587|Drosophila melanogaster CG15269-P...    29   7.5  

>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
           protein.
          Length = 1153

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 685 SKMGSKAPSCPPQPQKWEVKHRSAHL 762
           S   S+ PS PPQPQ+++  H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 726 SKMGSKAPKCPPQPQKWEVKHRSAHL 803
           S   S+ P  PPQPQ+++  H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 650 TGSKAPSCPPQPQKWEVKHRRAHL 721
           + S+ PS PPQPQ+++  H   H+
Sbjct: 127 SNSQPPSMPPQPQQFQSPHPSPHM 150


>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
            corepressor Atro protein.
          Length = 1985

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 685  SKMGSKAPSCPPQPQKWEVKHRSAHL 762
            S   S+ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 726  SKMGSKAPKCPPQPQKWEVKHRSAHL 803
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 650  TGSKAPSCPPQPQKWEVKHRRAHL 721
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
          Length = 1966

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 685  SKMGSKAPSCPPQPQKWEVKHRSAHL 762
            S   S+ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 726  SKMGSKAPKCPPQPQKWEVKHRSAHL 803
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 650  TGSKAPSCPPQPQKWEVKHRRAHL 721
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
            isoform A protein.
          Length = 1966

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 685  SKMGSKAPSCPPQPQKWEVKHRSAHL 762
            S   S+ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 726  SKMGSKAPKCPPQPQKWEVKHRSAHL 803
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 650  TGSKAPSCPPQPQKWEVKHRRAHL 721
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
            isoform D protein.
          Length = 1985

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 685  SKMGSKAPSCPPQPQKWEVKHRSAHL 762
            S   S+ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 726  SKMGSKAPKCPPQPQKWEVKHRSAHL 803
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 650  TGSKAPSCPPQPQKWEVKHRRAHL 721
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
            isoform B protein.
          Length = 1985

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 685  SKMGSKAPSCPPQPQKWEVKHRSAHL 762
            S   S+ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 726  SKMGSKAPKCPPQPQKWEVKHRSAHL 803
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 650  TGSKAPSCPPQPQKWEVKHRRAHL 721
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
            isoform C protein.
          Length = 1988

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 685  SKMGSKAPSCPPQPQKWEVKHRSAHL 762
            S   S+ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 726  SKMGSKAPKCPPQPQKWEVKHRSAHL 803
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 650  TGSKAPSCPPQPQKWEVKHRRAHL 721
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AY128414-1|AAM75007.1|  311|Drosophila melanogaster GH04057p
           protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 592 TVGTQNPAESASNHTA---QKINGK*STVVP-TSTSKMGSKAPSCPPQPQKWEVKHRSAH 759
           T+ T  PA S     A   +  NG     VP T+    GS +P+C P+P+  E+  R   
Sbjct: 41  TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 100

Query: 760 LNL 768
           L L
Sbjct: 101 LLL 103


>AE014298-2029|AAF48366.1|  308|Drosophila melanogaster CG9400-PA
           protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 592 TVGTQNPAESASNHTA---QKINGK*STVVP-TSTSKMGSKAPSCPPQPQKWEVKHRSAH 759
           T+ T  PA S     A   +  NG     VP T+    GS +P+C P+P+  E+  R   
Sbjct: 38  TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 97

Query: 760 LNL 768
           L L
Sbjct: 98  LLL 100


>AY061177-1|AAL28725.1|  101|Drosophila melanogaster LD14555p
           protein.
          Length = 101

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -3

Query: 248 ICFC*EMKRSRTPRRQERPCYRILATPDREPALKL*KRSLAAPLPLFCAWRSCVRFLLKH 69
           +C C   K ++T +R E+ C R L T     ALK  K    AP P  C  +  ++ +L+ 
Sbjct: 26  VCACVGAKWNQTSQRVEQCCQRSLIT-----ALKK-KSPFFAPPPPLCQRKLKIQIVLQK 79

Query: 68  VWDLCNFNS 42
            W    F S
Sbjct: 80  FWLPWKFKS 88


>AE014134-2568|AAF53440.2|  587|Drosophila melanogaster CG15269-PA
           protein.
          Length = 587

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
 Frame = +2

Query: 599 GRKIRPNPHLTILLKK*TGSKAPSCPPQPQKWEVKHR-RAHLNLKNGK*STEVP------ 757
           G+      ++T+  +  +G K  SCP  P+ +  KH  + HLN   G      P      
Sbjct: 445 GKSFADRSNMTLHHRLHSGIKPFSCPLCPKAFTKKHHLKTHLNYHTGCKPYVCPHPNCNQ 504

Query: 758 --TSTSKMGSKAPKCPPRP 808
             T +S M + A KC  RP
Sbjct: 505 AFTQSSNMRTHAKKCQYRP 523


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,184,129
Number of Sequences: 53049
Number of extensions: 845823
Number of successful extensions: 2529
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)