Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16h15
(281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754... 29 0.42
07_03_0395 + 17644813-17644921,17644961-17645084,17645545-176462... 28 1.3
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 27 1.7
03_03_0094 + 14378953-14380728 27 1.7
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 27 1.7
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 2.2
10_03_0013 + 7045552-7045686,7045868-7046083 26 5.2
04_04_1409 + 33359206-33359643 26 5.2
08_01_0306 - 2570411-2570419,2570809-2570886,2571464-2571671,257... 25 6.8
11_04_0406 - 17334172-17334537,17334803-17334887,17334892-17335091 25 9.0
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 25 9.0
07_01_1017 - 8662144-8662466,8662554-8663535 25 9.0
07_01_0216 - 1615604-1615626,1615835-1617782 25 9.0
03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995 25 9.0
>12_01_0819 +
7545656-7546006,7546087-7546162,7547196-7547401,
7547498-7547584,7547673-7547765,7548172-7548326,
7548470-7548554,7548632-7548718,7548801-7548920,
7549707-7549808,7549903-7550070
Length = 509
Score = 29.5 bits (63), Expect = 0.42
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 198 NMNTSVDAVTKLIRLQNDVLD-MMREVDQYLNSDTPDYTIESLNAP 64
N+ + T+L+RL+ +L ++ ++++N D PD+T+ AP
Sbjct: 459 NLEPKKEVATRLVRLEKKLLHGCLQAANEFIN-DLPDHTVSPCPAP 503
>07_03_0395 +
17644813-17644921,17644961-17645084,17645545-17646268,
17646971-17647219
Length = 401
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -3
Query: 174 VTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESNRH 1
V +RL + LD+ + +DQ + SD +E L G++ LDE L ++ S+R+
Sbjct: 287 VLACVRLAHPELDLWKILDQGVASDAHKDVMEELEGIGQR---LDEALKQECRRSSRY 341
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 202 KKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLH 86
K H H+R +G + + + RR H A S S R L+
Sbjct: 23 KGHHHLRSKGLSSPAASRRRGAHSASSSASSSSRRRVLY 61
>03_03_0094 + 14378953-14380728
Length = 591
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 205 KKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQR 101
KKK +H GD A +R+VG D S +S ++
Sbjct: 471 KKKKKHKDWAGDNADEGRKRKVGDDDLSASVSAKK 505
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 95 GVSLFRYWSTSRIMSNTSFC 154
G S+FRYW RI S T+ C
Sbjct: 240 GRSIFRYWPPGRIGSTTTDC 259
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.1 bits (57), Expect = 2.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 45 KNQTVCPARLRILWCNRACR 104
+ ++CP+R+R + +RACR
Sbjct: 789 RTDSICPSRVRAMLASRACR 808
>10_03_0013 + 7045552-7045686,7045868-7046083
Length = 116
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 226 IVAI*FSKKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHAR 92
+ AI +K+K R A FAE+ R+G + + +HA+
Sbjct: 56 LAAIENTKRKRNEERELRKMAREFAEKNERAKERAGKVDRAQHAK 100
>04_04_1409 + 33359206-33359643
Length = 145
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 145 VVLQTNELCHRVHGRVHVSF--LKTKLQQLYV 234
VVL +CHRVH H + L L++++V
Sbjct: 59 VVLDGRSICHRVHLSKHTGYRSLAAALRRMFV 90
>08_01_0306 -
2570411-2570419,2570809-2570886,2571464-2571671,
2573400-2573521,2573815-2573883,2573963-2574052,
2574113-2574230,2574956-2575086,2575195-2575464,
2577323-2577433,2577604-2578152
Length = 584
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -2
Query: 184 RGRGDKAHSFAERRVGHDARSGPISKQRHARLHHRILKRA 65
RG G H A R G D R + + H HH ++ A
Sbjct: 505 RGTG---HGVANRGQGRDGREDVVLQSNHYAGHHAVINSA 541
>11_04_0406 - 17334172-17334537,17334803-17334887,17334892-17335091
Length = 216
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 166 LCHRVHGRVHVSFLKTKLQQLYVS 237
+CH +H ++ VSF +L+ + S
Sbjct: 49 ICHSIHAKIRVSFFLLQLRLPFYS 72
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 84 WCNRAC-RCLDIGPLRASC 137
W + C RCL +G L+ASC
Sbjct: 66 WLHGRCFRCLGLGHLKASC 84
>07_01_1017 - 8662144-8662466,8662554-8663535
Length = 434
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 275 DCADEYIKPNCIVDTYNCCNLVFKKET 195
DCA+E PN YNC L +T
Sbjct: 295 DCANEIPLPNAGYHLYNCHELTIPLQT 321
>07_01_0216 - 1615604-1615626,1615835-1617782
Length = 656
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 132 MREVDQYLNSDTPDYTIESLNAPG 61
MR+V QYLN D P E+++ PG
Sbjct: 614 MRQVTQYLNGDMP--LPETISNPG 635
>03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995
Length = 173
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 142 HVVLQTNELCHRVHGRVHVSFLKTKLQQLYVSTIQFGLIYS 264
HV+++ + CH+ ++ L +Y+S I FGL+Y+
Sbjct: 32 HVMMKKS--CHKCDNQIDAK-LGQSSTHIYLSIIAFGLLYN 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,900,388
Number of Sequences: 37544
Number of extensions: 122510
Number of successful extensions: 421
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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