Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h15
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   1.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   3.8  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   5.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   8.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   8.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 27  LLAFHLKNQTVCPARLRILWCNRACRC 107
           L  + LK++   P    I  CN+ C C
Sbjct: 454 LCPYTLKHKIRVPPGTPIYECNKRCNC 480


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 272 CADEYIKPNCIVDTYNC 222
           C    ++P C+V  Y C
Sbjct: 247 CLTVGMRPECVVPEYQC 263


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 152 CKRMSFVTASTD 187
           CKR + +TA+TD
Sbjct: 174 CKRTATITAATD 185



 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 237 GHVQLLQFSFQKR 199
           G+V+L+ F F KR
Sbjct: 503 GYVKLVDFGFAKR 515


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 VLQTNELCHRVHGRVHVSFLK 210
           ++QT +  + ++   H SFLK
Sbjct: 95  IIQTEKYSNMLNSEKHASFLK 115


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 272 CADEYIKPNCIVDTYNC 222
           C    ++P C+V  Y C
Sbjct: 44  CLTVGMRPECMVPEYQC 60


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 109 KQRHARLHH 83
           K+RH  LHH
Sbjct: 100 KERHITLHH 108


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 109 KQRHARLHH 83
           K+RH  LHH
Sbjct: 100 KERHITLHH 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,180
Number of Sequences: 438
Number of extensions: 1329
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)