Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h12
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275...    28   7.3  
03_06_0773 + 36167986-36168148,36168325-36168714,36168790-361689...    28   9.7  

>03_05_0776 +
           27625122-27625415,27627226-27627273,27627455-27627514,
           27627633-27627802,27627901-27627973,27628096-27628161,
           27628262-27628345,27628681-27628758,27629009-27629092,
           27629835-27630137,27630227-27630397,27630971-27631161,
           27631284-27631686,27632246-27632497,27632577-27633077,
           27633181-27633278,27633400-27633499,27633722-27633867,
           27633973-27634138
          Length = 1095

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +2

Query: 110 KRIKGFNIWCSMKWI*AKSYSTAKNWNIHNRPVEIKKTTNYIYFCFTMAALNNRAACSIA 289
           KR+ G+  WC+  W  A  ++  K  N +  P  I  TT      + ++ LN     ++ 
Sbjct: 768 KRVVGYRQWCNKLWN-AIRFAMGKLGNHYTPPATISVTTMPPICKWILSVLNKAIGKTVT 826

Query: 290 LL*NYLYFPIEMANFS 337
            L  Y +     A +S
Sbjct: 827 SLEAYKFSDATSAIYS 842


>03_06_0773 +
           36167986-36168148,36168325-36168714,36168790-36168965,
           36169953-36170071,36170156-36170441
          Length = 377

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 785 LFY*LESICIVIQNIGIGKFNVDMHYRSYVYERKYI 678
           LFY L S   ++Q I I  F     Y   +Y  KY+
Sbjct: 164 LFYRLRSDLCLVQQINIQPFRAFFQYGDPIYSAKYV 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,158,234
Number of Sequences: 37544
Number of extensions: 343853
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)