Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h12
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81114-4|CAB03288.2|  688|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AY652944-1|AAT73711.1|  688|Caenorhabditis elegans guanylate cyc...    28   8.7  
AF067947-9|AAK68398.1|  230|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z81114-4|CAB03288.2|  688|Caenorhabditis elegans Hypothetical
           protein T04D3.4 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 657 TFPSTLSNIFSLINITSVVHIHIKFPYSYILYYDTNAF 770
           TFP+ +     + ++  +VH  + F Y  I YY  + F
Sbjct: 249 TFPNAMRQETRVTDLLELVHPEVPFSYESIKYYKNSLF 286


>Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical
           protein F53F1.8 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 621 LIYTLNIHMYNIMHTFFFLYNLL 553
           ++Y+L I+ Y     F+FLYN+L
Sbjct: 261 VVYSLQINQYMNKRIFYFLYNIL 283


>AY652944-1|AAT73711.1|  688|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 657 TFPSTLSNIFSLINITSVVHIHIKFPYSYILYYDTNAF 770
           TFP+ +     + ++  +VH  + F Y  I YY  + F
Sbjct: 249 TFPNAMRQETRVTDLLELVHPEVPFSYESIKYYKNSLF 286


>AF067947-9|AAK68398.1|  230|Caenorhabditis elegans Hypothetical
           protein T10B5.4 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +1

Query: 61  NWSLNRHLPEDELKGQQENQGIQYMVLYEMDLS*VLFNSKKLEYTQSSCRNK 216
           +W  N  +   + K +  N+ + ++ + E DLS +  N KK+      C +K
Sbjct: 92  HWDFNAEITNGQYKHENANKLVAFVQVLEQDLSFLTGNPKKVFKIDVLCVSK 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,516
Number of Sequences: 27780
Number of extensions: 383980
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)