Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16h09
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho... 41 2e-04
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 29 0.68
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 3.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 3.6
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 26 6.3
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 26 6.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 6.3
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 26 6.3
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.4
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 8.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.4
>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
5',5'''-p1,p6-hexaphosphate hydrolase Aps1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = -2
Query: 695 RRAACICVRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXXXXVTAMREVLEEAGVIGKLG 516
R AA + S + +VLLV+S+++ +W+ A+RE EE G++G +
Sbjct: 42 RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHIT 101
Query: 515 RCLGVFENR 489
R LG F+++
Sbjct: 102 RSLGSFKDK 110
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.68
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -2
Query: 365 LALHKPIQRHYLQQLRRSKQNKQDDQTTYN 276
L +H+ +QRH+++ LR + + D++ +N
Sbjct: 787 LEIHQRLQRHFVELLRPALSERNDEEAIFN 816
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 383 DDALAQLALHKPIQRHYLQQLRRSKQNKQD 294
DD LA L LH+ ++ +LQQ SK N QD
Sbjct: 553 DDKLAYLELHEALKLAFLQQYDFSK-NVQD 581
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 383 DDALAQLALHKPIQRHYLQQLRRSKQNKQD 294
DD LA L LH+ ++ +LQQ SK N QD
Sbjct: 553 DDKLAYLELHEALKLAFLQQYDFSK-NVQD 581
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = -2
Query: 440 LPEWEDSRLMGRKRQWFSIDD--ALAQLALHKPIQRHYLQQLRRSKQNKQD 294
LP+W G +R W DD A+ L R Y + + K +D
Sbjct: 525 LPQWVRRLFKGNRRFWEDPDDRKAMDNATLEMATSRSYSEDGKNEKTTHED 575
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 516 TMSWSIREPRTQTPNRGLCYDCDPRTTRVGG 424
T ++ E RT+ G+ Y CDPR G
Sbjct: 38 TQDPALNEVRTEKLKNGVTYVCDPRPGHFSG 68
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 487 SRFSNTPRHRPSFPITPASSSTSRIA 564
+R ++TP + S P P+SSST I+
Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSIS 132
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 502 TPRHRPSFPITPASSSTSR 558
TPRH+P F ++ A SS ++
Sbjct: 618 TPRHKPKFDLSKALSSVAK 636
>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 591 YSPARHNPVVGPSRRRHQQDL 653
Y A HNP V RRH ++L
Sbjct: 87 YKAAMHNPKVSQKGRRHAKEL 107
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 442 NYPSGRIQDSWDVRGN 395
NY S R++D WD++ N
Sbjct: 354 NYESSRVEDFWDIQLN 369
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 549 YLPHRSDRRLLFRLYSPARHNPVVGPSRRRHQQ 647
+LP + LL + PA+ +P +GP+++ QQ
Sbjct: 56 HLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQ 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,312
Number of Sequences: 5004
Number of extensions: 55846
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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