Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h09
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    85   6e-17
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
 Frame = -2

Query: 725 IRIYDDEGFRRRAACICVRSDA-ETEVLLVTSSRRPDNWIXXXXXXXXXXXXXVTAMREV 549
           +R+ D +GFR RAA +C++    ET VLLV+  +    W+               A RE+
Sbjct: 15  VRLRDTDGFRIRAAALCIKGTGKETLVLLVSGGKDGGKWVVPGGGIEKDECAEEAAHREL 74

Query: 548 LEEAGVIGKLGRCLGVFENREHKHRTEVYVMTVTQELPEWEDSRLMGRKRQWFSI 384
           +EEAGV   + + +G+F++   KHRT+V++M V++EL  WE++   GR+R W ++
Sbjct: 75  MEEAGVRATILKKIGMFQDDVRKHRTQVFLMEVSEELQTWEENE-YGRQRIWMNV 128


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 415 SWDVRGNGSLLMMPWLSSPFTSQSSVTTF---NNCVVPNRTSKMTRLRT 278
           SW    NG  L++ WLS  F + S V  F   N+ +V N+  +MT+ RT
Sbjct: 102 SWFEVPNGVQLLIVWLSMTFAAASYVYVFESRNSTLVQNK-FRMTQRRT 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,453
Number of Sequences: 27780
Number of extensions: 321811
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)