Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h09
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.97 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.97 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 686 ACICVRSDAETEVLLVTSSRRPDNW 612
           +CICVR  AE   +L  S++  ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 686 ACICVRSDAETEVLLVTSSRRPDNW 612
           +CICVR  AE   +L  S++  ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 271 GRLYVVWSSCLFCL 312
           G L VVW  C FC+
Sbjct: 211 GTLAVVWIMCYFCI 224


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 271 GRLYVVWSSCLFCL 312
           G L VVW  C FC+
Sbjct: 264 GTLAVVWIMCYFCI 277


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 436 PSGRIQD-SWDVRGNGSL-LMMPWLSSPFTSQSSVTTFNNCVVPNRTSKM 293
           P+ RI    + +   GS   + P  ++   SQS++ T    V P+RTS M
Sbjct: 375 PTERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPM 424


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 271 GRLYVVWSSCLFCL 312
           G L +VW  C FC+
Sbjct: 178 GTLLLVWILCYFCI 191


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 349 QSSVTTFNNCVVPNRTSKMTRLRTTFPVSVFKRL 248
           +SS+   N  V   R   ++ L   FP  + KRL
Sbjct: 443 KSSIEEANLAVSAEREKNVSLLHLIFPPDIAKRL 476


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 317 RSKQNKQDDQTTYNLPS*CFQKVGGESPPR 228
           ++++ K+  Q    +   C Q +GG+  PR
Sbjct: 255 QAEEYKKIQQILIRMNKLCIQTIGGQIKPR 284


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 236 VILLQPFENTNW 271
           V  LQPF NT W
Sbjct: 558 VSFLQPFSNTLW 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,987
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)