Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16h08
(685 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069831-1|AAL39976.1| 485|Drosophila melanogaster SD07771p pro... 30 3.4
AL138972-12|CAB72295.1| 721|Drosophila melanogaster EG:BACR7C10... 30 3.4
AE014298-419|ABC67171.1| 485|Drosophila melanogaster CG9900-PC,... 30 3.4
AE014298-418|AAF45794.1| 721|Drosophila melanogaster CG9900-PB,... 30 3.4
X64390-1|CAB76122.1| 721|Drosophila melanogaster zw10 protein p... 29 4.5
BT015225-1|AAT94454.1| 1129|Drosophila melanogaster RE23320p pro... 29 4.5
BT011079-1|AAR82745.1| 1100|Drosophila melanogaster SD01102p pro... 29 4.5
AE014296-98|AAF47384.1| 941|Drosophila melanogaster CG1233-PA, ... 29 4.5
AE014296-97|AAG22219.2| 1129|Drosophila melanogaster CG1233-PB, ... 29 4.5
>AY069831-1|AAL39976.1| 485|Drosophila melanogaster SD07771p
protein.
Length = 485
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -2
Query: 654 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 478
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 477 AMLSTLEMTQPLLEI 433
S E L+++
Sbjct: 194 LQQSLQERFDRLVQL 208
>AL138972-12|CAB72295.1| 721|Drosophila melanogaster
EG:BACR7C10.3,FBgn0004643;mit(1)15 protein.
Length = 721
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -2
Query: 654 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 478
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 477 AMLSTLEMTQPLLEI 433
S E L+++
Sbjct: 194 LQQSLQERFDRLVQL 208
>AE014298-419|ABC67171.1| 485|Drosophila melanogaster CG9900-PC,
isoform C protein.
Length = 485
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -2
Query: 654 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 478
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 477 AMLSTLEMTQPLLEI 433
S E L+++
Sbjct: 194 LQQSLQERFDRLVQL 208
>AE014298-418|AAF45794.1| 721|Drosophila melanogaster CG9900-PB,
isoform B protein.
Length = 721
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -2
Query: 654 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 478
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 477 AMLSTLEMTQPLLEI 433
S E L+++
Sbjct: 194 LQQSLQERFDRLVQL 208
>X64390-1|CAB76122.1| 721|Drosophila melanogaster zw10 protein
protein.
Length = 721
Score = 29.5 bits (63), Expect = 4.5
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -2
Query: 654 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 478
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 477 AMLSTLEMTQPLLEI 433
S E L+++
Sbjct: 194 LQQSLQERFARLVQL 208
>BT015225-1|AAT94454.1| 1129|Drosophila melanogaster RE23320p protein.
Length = 1129
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 GFNPQXMPKIASNPYRNLVVYLTRNHRCASCFCA*RRQTSWLSARCSYRFQSLLKPRCQT 200
G Q +I+ P N VV HRC C A +++ + C R + L P CQ
Sbjct: 916 GMGKQSNEQISVGPEGNPVVM----HRCEDCGAAFKQKKTLREHLCKERNEQLECPECQR 971
Query: 201 R 203
R
Sbjct: 972 R 972
>BT011079-1|AAR82745.1| 1100|Drosophila melanogaster SD01102p protein.
Length = 1100
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 GFNPQXMPKIASNPYRNLVVYLTRNHRCASCFCA*RRQTSWLSARCSYRFQSLLKPRCQT 200
G Q +I+ P N VV HRC C A +++ + C R + L P CQ
Sbjct: 978 GMGKQSNEQISVGPEGNPVVM----HRCEDCGAAFKQKKTLREHLCKERNEQLECPECQR 1033
Query: 201 R 203
R
Sbjct: 1034 R 1034
>AE014296-98|AAF47384.1| 941|Drosophila melanogaster CG1233-PA,
isoform A protein.
Length = 941
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 GFNPQXMPKIASNPYRNLVVYLTRNHRCASCFCA*RRQTSWLSARCSYRFQSLLKPRCQT 200
G Q +I+ P N VV HRC C A +++ + C R + L P CQ
Sbjct: 728 GMGKQSNEQISVGPEGNPVVM----HRCEDCGAAFKQKKTLREHLCKERNEQLECPECQR 783
Query: 201 R 203
R
Sbjct: 784 R 784
>AE014296-97|AAG22219.2| 1129|Drosophila melanogaster CG1233-PB,
isoform B protein.
Length = 1129
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 GFNPQXMPKIASNPYRNLVVYLTRNHRCASCFCA*RRQTSWLSARCSYRFQSLLKPRCQT 200
G Q +I+ P N VV HRC C A +++ + C R + L P CQ
Sbjct: 916 GMGKQSNEQISVGPEGNPVVM----HRCEDCGAAFKQKKTLREHLCKERNEQLECPECQR 971
Query: 201 R 203
R
Sbjct: 972 R 972
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,089,021
Number of Sequences: 53049
Number of extensions: 592658
Number of successful extensions: 1375
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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