Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h05
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   0.78 
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   1.0  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    24   2.4  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    24   3.1  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    23   5.5  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    23   7.3  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    23   7.3  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 212 SEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 90
           S     K  +P K K ++P+ +FD D      TE     +E
Sbjct: 46  SSILFDKNKKPLKPKIIIPDKEFDLDYYLKDETESIQSPFE 86


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 212 SEASISKQSEP-AKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KKKINSYLF 57
           + AS++  + P A    V+PE K    ++N+     STV  EL K++  S+ F
Sbjct: 225 TSASVAASTAPKAASPAVLPEGKPRRRKNNSQMRFCSTVLKELYKRQYESFAF 277


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 197 SKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL 87
           +K S+PA +  V+P   F S  S  P+ EG+  +  L
Sbjct: 284 TKNSKPAGQ--VIPSSPFTSTLSRFPSLEGAVSEISL 318


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 109 PSVAGAFDSSLSNLSSGTTVFFFAGSDCLLILA 207
           PS+ G+   S++  + G    +F G+ CLL +A
Sbjct: 64  PSLVGSMAFSMNCGAGGMVWSWFVGATCLLPIA 96


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 212 SEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGST 102
           SE + SKQ+E  +  +V    +  + ES  P + GST
Sbjct: 127 SEPANSKQNEVVEATSVEKAKENVAHESGTPESGGST 163


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 79  RRLIHIYLNEY 47
           RRL+HIYL +Y
Sbjct: 86  RRLVHIYLLQY 96


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 188 SEPAKKKTVVPEDKFDSDESNAPATEGSTVD 96
           ++PA   T VP++K        P  +GS ++
Sbjct: 485 TQPAASATPVPKEKPSEKSEKPPKKKGSKLE 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,675
Number of Sequences: 5004
Number of extensions: 9487
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)