Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h05
         (212 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061488-1|AAL29036.1|  244|Drosophila melanogaster LD45195p pro...    27   4.7  
AE014298-166|AAN09037.1| 1201|Drosophila melanogaster CG3638-PC,...    27   4.7  
AE014298-165|AAN09036.1| 1404|Drosophila melanogaster CG3638-PD,...    27   4.7  
AE014296-508|AAF47684.1|  244|Drosophila melanogaster CG1240-PA ...    27   4.7  
AE014134-975|AAF52291.1|  745|Drosophila melanogaster CG11034-PA...    27   4.7  
BT022769-1|AAY55185.1|  538|Drosophila melanogaster IP13916p pro...    26   6.2  
AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-P...    26   6.2  
AE014134-571|AAF51133.1|  528|Drosophila melanogaster CG3347-PA ...    26   6.2  

>AY061488-1|AAL29036.1|  244|Drosophila melanogaster LD45195p
           protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 203 SISKQSEPAKKKTVVPEDK-FDSDESNAPATEGSTVDYEL*KK 78
           S  K+ +P K K    + K  ++D+S   +  GS  DYE+ KK
Sbjct: 104 SPKKRPQPTKHKAPKKKRKTLNADDSGTESDAGSDSDYEVVKK 146


>AE014298-166|AAN09037.1| 1201|Drosophila melanogaster CG3638-PC,
           isoform C protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 145 LTVMSQMHQQQKDQLLTMSYRRRR 74
           L +  Q  QQQ+ QLLT+  +R R
Sbjct: 899 LALQQQQQQQQQQQLLTLQQQRER 922


>AE014298-165|AAN09036.1| 1404|Drosophila melanogaster CG3638-PD,
           isoform D protein.
          Length = 1404

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 145 LTVMSQMHQQQKDQLLTMSYRRRR 74
           L +  Q  QQQ+ QLLT+  +R R
Sbjct: 899 LALQQQQQQQQQQQLLTLQQQRER 922


>AE014296-508|AAF47684.1|  244|Drosophila melanogaster CG1240-PA
           protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 203 SISKQSEPAKKKTVVPEDK-FDSDESNAPATEGSTVDYEL*KK 78
           S  K+ +P K K    + K  ++D+S   +  GS  DYE+ KK
Sbjct: 104 SPKKRPQPTKHKAPKKKRKTLNADDSGTESDAGSDSDYEVVKK 146


>AE014134-975|AAF52291.1|  745|Drosophila melanogaster CG11034-PA
           protein.
          Length = 745

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 157 LRTNLTVMSQMHQQQKDQLLTMSYRRRRLIHIYLN 53
           + TN TV  Q+H+ +K Q    S  R RL ++YLN
Sbjct: 126 IETNTTV--QIHKGEKLQYCGWSPLRDRLAYVYLN 158


>BT022769-1|AAY55185.1|  538|Drosophila melanogaster IP13916p
           protein.
          Length = 538

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 194 KQSEPAKKKTVVPEDKFDSDESNAPATE 111
           K  + AKKK   PEDK  +D++  PA E
Sbjct: 178 KPKKTAKKKNPKPEDKV-TDDAQKPAVE 204


>AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-PA
           protein.
          Length = 2059

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 200 ISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KKK 75
           ++K+S+  KKK    + K   DES   +TE    D    KKK
Sbjct: 31  LAKESDTPKKKKKKDKTKESFDESTLESTETDPADSTPSKKK 72


>AE014134-571|AAF51133.1|  528|Drosophila melanogaster CG3347-PA
           protein.
          Length = 528

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 194 KQSEPAKKKTVVPEDKFDSDESNAPATE 111
           K  + AKKK   PEDK  +D++  PA E
Sbjct: 195 KPKKTAKKKNPKPEDKV-TDDAQKPAVE 221


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,769,185
Number of Sequences: 53049
Number of extensions: 91140
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 24,988,368
effective HSP length: 50
effective length of database: 22,335,918
effective search space used: 446718360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)