Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h05
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z96102-2|CAI79216.1|  746|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z73102-12|CAA97406.1|  430|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical ...    25   7.3  
AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U55374-2|AAB36865.2|  375|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical
           protein W02F12.3 protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 188 SEPAKKKTVVPEDKFDSDESNAPATEG 108
           SEP  +    PED  D D+SN P+T G
Sbjct: 297 SEPQNRPPSRPED--DDDDSNKPSTSG 321


>Z96102-2|CAI79216.1|  746|Caenorhabditis elegans Hypothetical
           protein H39E23.3 protein.
          Length = 746

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 212 SEASISKQSEPAKKKTVVPEDKFDSDESNAPA 117
           +E++ S++  PAK+++  P+ +    E NAPA
Sbjct: 136 TESADSEKKAPAKRESDKPKTESADSEKNAPA 167



 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 212 SEASISKQSEPAKKKTVVPEDKFDSDESNAPA 117
           +E++ S++  PAK++   P+ +    E NAPA
Sbjct: 536 TESADSEKKAPAKREADPPKTESADSEKNAPA 567



 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 212 SEASISKQSEPAKKKTVVPEDKFDSDESNAPA 117
           +E++ S++  PAK++   P+ +    E NAPA
Sbjct: 656 TESADSEKKAPAKREADPPKTESADSEKNAPA 687



 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 212 SEASISKQSEPAKKKTVVPEDKFDSDESNAPA 117
           +E++ S++  P K+++  P+ +    E NAPA
Sbjct: 56  TESADSEKKAPTKRESDKPKTESADSEKNAPA 87


>Z73102-12|CAA97406.1|  430|Caenorhabditis elegans Hypothetical
           protein B0035.11 protein.
          Length = 430

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 194 KQSEPAKKKTVVPEDKFDSDESNAP 120
           K+ EP+KK+ ++ E   D D   AP
Sbjct: 33  KKQEPSKKRAILNESDDDDDSRPAP 57


>Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical
           protein T06E6.1 protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 197 SKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KKK 75
           SK S+  K+K V+  D+   +E ++   E      ++ KKK
Sbjct: 388 SKNSQKLKRKNVLEADEIKEEEGDSDEAEVKKTTKKVLKKK 428


>AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical
           protein Y39C12A.1 protein.
          Length = 276

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 185 EPAKKKTVVPEDKFDSDESNAPATEGST 102
           E  KK  V+  D FD+ +  A +T+GS+
Sbjct: 187 ERYKKTGVIRSDAFDAPQGTAMSTKGSS 214


>AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical
           protein W03F8.3 protein.
          Length = 389

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 212 SEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVD 96
           S ASIS   EP +   VVP D    +   A    G  V+
Sbjct: 224 STASISVLPEPEEVSVVVPSDSVKIEAMRASGPGGQNVN 262


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 200 ISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTV 99
           I +  EP+  K   P D   SD  NAP +E S +
Sbjct: 361 IPRSIEPSNSKPY-PSDSSWSDHDNAPGSEPSYI 393


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
           protein K08E7.5a protein.
          Length = 1221

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 200 ISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTV 99
           I +  EP+  K   P D   SD  NAP +E S +
Sbjct: 686 IPRSIEPSNSKPY-PSDSSWSDHDNAPGSEPSYI 718


>Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical
           protein M106.4b protein.
          Length = 794

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 197 SKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KKKINS 66
           S    P  KK   PED+FDS   NA  +  + V+  L  +K++S
Sbjct: 66  STNKAPPPKKA--PEDRFDSANMNASGSHVTLVE-NLPVEKVSS 106


>U55374-2|AAB36865.2|  375|Caenorhabditis elegans Hypothetical
           protein T02C5.1a protein.
          Length = 375

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 157 LRTNLTVMSQMHQQQKDQLLTMSYRRRRLI 68
           +RTN+ V+     ++ DQL+  S + RR I
Sbjct: 258 IRTNVEVVEAEEIEEFDQLIAKSLKNRRKI 287


>U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical
           protein T02C5.1b protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 157 LRTNLTVMSQMHQQQKDQLLTMSYRRRRLI 68
           +RTN+ V+     ++ DQL+  S + RR I
Sbjct: 275 IRTNVEVVEAEEIEEFDQLIAKSLKNRRKI 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,697,783
Number of Sequences: 27780
Number of extensions: 52664
Number of successful extensions: 253
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)