Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h05
         (212 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   2.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   6.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   8.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   8.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   8.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   8.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +3

Query: 108 SFCCWC 125
           S CCWC
Sbjct: 10  SCCCWC 15


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 147 FVLRNNSFFFCW 182
           F L NNS   CW
Sbjct: 320 FGLMNNSAIGCW 331


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 177 KKKNCC 160
           +KKNCC
Sbjct: 396 RKKNCC 401


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 177 KKKNCC 160
           +KKNCC
Sbjct: 396 RKKNCC 401


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 73  IFFFYNS*STVDPSVAGAFDSSLSNLSS 156
           +F F  + S ++P V GAF+    N +S
Sbjct: 301 LFLFACTNSCMNPIVYGAFNIRDRNKTS 328


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 58   NKYELIFFFYNS*STVDPS 114
            ++Y++    YN   T DPS
Sbjct: 1431 SRYQIYVTAYNGIGTGDPS 1449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,636
Number of Sequences: 438
Number of extensions: 797
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)