Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h04
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    39   7e-04
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    28   1.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   5.3  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -1

Query: 781 DPSGNFIKALDLGTNLPPL-GGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 614
           D +G F KA D G +   L G  RSKR++ V+ + KV  + +E + T +  S ADK+
Sbjct: 96  DWNGEFTKAFDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 392 QISRQFSWHFDCALVTFNTAFASIYLGS*TPREKDKLR 505
           Q++R + WH D AL  +N    +  L    P+    LR
Sbjct: 175 QVTRFYRWHIDAALYDYNPPVVTTLLAVNAPQGTQTLR 212


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +1

Query: 211 KMLLYIF-EVYSYINSKSKRSQTILFKSIVRCVRLINSVALYVKLLS*QPKQINNMK 378
           ++ +Y+F E+Y   +  S  +  ++ +S+VR  +   +++LY K+++ +PK   + K
Sbjct: 265 QIAIYMFDEMYRTHHWSSFTACRLMIESLVRQNKFEEAISLYKKIIAKRPKIARDKK 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,448
Number of Sequences: 5004
Number of extensions: 57603
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)