Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h04
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    31   0.78 
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048     31   0.78 
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    29   3.1  
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     29   3.1  
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283...    29   4.1  

>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +1

Query: 622 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAAADWCPGPEP 759
           RRE +T   H  PHSDL P   R P RT  + + R      P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229


>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
          Length = 162

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 781 DPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDG 647
           D  G + KAL L  +L   G G RS+RF+++  + KV   N+E  G
Sbjct: 103 DGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEEGG 148


>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 429 AQSKCQENCREICVNSRFHVIY--LLRLLAEQFYV*GNAINQ 310
           +QS CQE  R++C    + VIY  L  +L +  Y    A N+
Sbjct: 767 SQSACQEGIRQLCETFAYKVIYNDLSHVLLDSLYAGDTASNR 808


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 730 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 614
           PL G  S  F+ +I  S +Q  +V+ DGT  SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494


>04_04_1572 -
           34527730-34527859,34528077-34528136,34528253-34528375,
           34528506-34528960,34529343-34529876,34530638-34531501
          Length = 721

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 97  EIFFFFDLAHYMNNERHYFENFLILTKT 180
           ++FFF D   Y+ N+   F++FL +T T
Sbjct: 288 QVFFFLDWVKYLLNDAKLFKSFLRITLT 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,535,885
Number of Sequences: 37544
Number of extensions: 352363
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)