Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h03
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    42   1e-04
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.54 
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    27   1.7  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   3.8  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   8.8  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.8  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    25   8.8  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = -1

Query: 316 FGSLIIGYARNPSLKQQLFSYAILGFALSE 227
           F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 23  AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 109
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 495 HLQLYPPIHRWYLLSLHSSLQC 430
           HL +Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 6   LHSXLTRTVGVTHISPCITMRVRFPNIRFHGCP 104
           LH   T+   + + SP + +  RFP++R H  P
Sbjct: 19  LHQYFTQFFVLRYASPSMHLDWRFPSLRIHSYP 51


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 569 NAVCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTC 456
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 5   IAFLXDAHCRCNTHQSLHHYEGEVSK--HSIPW 97
           I FL DA C      +L + EGE  K  ++ PW
Sbjct: 470 IKFLDDAKCETEDSTNLTNREGEAEKTLNTQPW 502


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 481 PTHTQMVPAVPTQLSAVRS 425
           P HT  VPAVP+Q+  + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 359 DSGSSWFRSWYW 324
           D G SWFR+ YW
Sbjct: 421 DCGMSWFRNEYW 432


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 53  LHHYEGEVSKHSIPWLSTPD 112
           +  Y G VS H + W++ PD
Sbjct: 184 IQQYAGSVSCHVLDWMNPPD 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,481
Number of Sequences: 5004
Number of extensions: 51958
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)