Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h03
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011492-1|AAR99150.1|  138|Drosophila melanogaster GM13193p pro...    89   3e-18
AE014297-4723|AAN14268.1|  138|Drosophila melanogaster CG1746-PC...    89   3e-18
AE014297-4722|AAF57131.1|  138|Drosophila melanogaster CG1746-PB...    89   3e-18
AE014297-4721|AAN14267.1|  138|Drosophila melanogaster CG1746-PA...    89   3e-18
M58417-1|AAA28665.1| 1639|Drosophila melanogaster laminin B2 cha...    33   0.31 
M25063-1|AAA28664.1| 1639|Drosophila melanogaster protein ( Dros...    33   0.31 
BT021394-1|AAX33542.1| 1639|Drosophila melanogaster LD15803p pro...    33   0.31 
AE014296-1694|AAF50238.1| 1639|Drosophila melanogaster CG3322-PA...    33   0.31 
AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-P...    31   0.95 
M33753-1|AAA28428.1| 2146|Drosophila melanogaster crumbs protein...    31   1.3  
AE014297-3522|AAF56276.1| 2146|Drosophila melanogaster CG6383-PA...    31   1.3  
AE014297-3521|ABI31202.1| 2189|Drosophila melanogaster CG6383-PB...    31   1.3  
AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC...    29   6.7  
AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB...    29   6.7  
AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA...    29   6.7  
BT030179-1|ABN49318.1|   82|Drosophila melanogaster IP17830p pro...    28   8.9  
AE014297-3684|AAF56376.1| 2768|Drosophila melanogaster CG13648-P...    28   8.9  

>BT011492-1|AAR99150.1|  138|Drosophila melanogaster GM13193p
           protein.
          Length = 138

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 54/97 (55%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
 Frame = -1

Query: 502 VRPLA-AVPTHTQMVPAVPTQ----LSAVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXX 338
           +RPL+ A+ + +Q + A  T     L  +RSFQT+ VT+DIDSAAKF             
Sbjct: 25  LRPLSSAIISQSQTLAAQNTTPVALLPQIRSFQTSPVTRDIDSAAKFIGAGAATVGVAGS 84

Query: 337 XXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 227
                 VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 85  GAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 121


>AE014297-4723|AAN14268.1|  138|Drosophila melanogaster CG1746-PC,
           isoform C protein.
          Length = 138

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 54/97 (55%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
 Frame = -1

Query: 502 VRPLA-AVPTHTQMVPAVPTQ----LSAVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXX 338
           +RPL+ A+ + +Q + A  T     L  +RSFQT+ VT+DIDSAAKF             
Sbjct: 25  LRPLSSAIISQSQTLAAQNTTPVALLPQIRSFQTSPVTRDIDSAAKFIGAGAATVGVAGS 84

Query: 337 XXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 227
                 VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 85  GAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 121


>AE014297-4722|AAF57131.1|  138|Drosophila melanogaster CG1746-PB,
           isoform B protein.
          Length = 138

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 54/97 (55%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
 Frame = -1

Query: 502 VRPLA-AVPTHTQMVPAVPTQ----LSAVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXX 338
           +RPL+ A+ + +Q + A  T     L  +RSFQT+ VT+DIDSAAKF             
Sbjct: 25  LRPLSSAIISQSQTLAAQNTTPVALLPQIRSFQTSPVTRDIDSAAKFIGAGAATVGVAGS 84

Query: 337 XXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 227
                 VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 85  GAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 121


>AE014297-4721|AAN14267.1|  138|Drosophila melanogaster CG1746-PA,
           isoform A protein.
          Length = 138

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 54/97 (55%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
 Frame = -1

Query: 502 VRPLA-AVPTHTQMVPAVPTQ----LSAVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXX 338
           +RPL+ A+ + +Q + A  T     L  +RSFQT+ VT+DIDSAAKF             
Sbjct: 25  LRPLSSAIISQSQTLAAQNTTPVALLPQIRSFQTSPVTRDIDSAAKFIGAGAATVGVAGS 84

Query: 337 XXXXXXVFGSLIIGYARNPSLKQQLFSYAILGFALSE 227
                 VFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 85  GAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 121


>M58417-1|AAA28665.1| 1639|Drosophila melanogaster laminin B2 chain
            protein.
          Length = 1639

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
 Frame = +2

Query: 326  NTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMG---GYSCKW 496
            N  SG    +C C     + S  +  S +C     HCR      R   C     G+S + 
Sbjct: 946  NIRSGNGCENCLCDPVGSYNSTCDRYSGQC-----HCRPGVMGQRCDQCENYFYGFSSEG 1000

Query: 497  SHQCRVAEDGRPGCRGDQSG 556
               C   E G  G + DQ+G
Sbjct: 1001 CKPCECDESGSKGFQCDQNG 1020


>M25063-1|AAA28664.1| 1639|Drosophila melanogaster protein (
            Drosophila mRNA forlaminin B2 chain. ).
          Length = 1639

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
 Frame = +2

Query: 326  NTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMG---GYSCKW 496
            N  SG    +C C     + S  +  S +C     HCR      R   C     G+S + 
Sbjct: 946  NIRSGNGCENCLCDPVGSYNSTCDRYSGQC-----HCRPGVMGQRCDQCENYFYGFSSEG 1000

Query: 497  SHQCRVAEDGRPGCRGDQSG 556
               C   E G  G + DQ+G
Sbjct: 1001 CKPCECDESGSKGFQCDQNG 1020


>BT021394-1|AAX33542.1| 1639|Drosophila melanogaster LD15803p protein.
          Length = 1639

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
 Frame = +2

Query: 326  NTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMG---GYSCKW 496
            N  SG    +C C     + S  +  S +C     HCR      R   C     G+S + 
Sbjct: 946  NIRSGNGCENCLCDPVGSYNSTCDRYSGQC-----HCRPGVMGQRCDQCENYFYGFSSEG 1000

Query: 497  SHQCRVAEDGRPGCRGDQSG 556
               C   E G  G + DQ+G
Sbjct: 1001 CKPCECDESGSKGFQCDQNG 1020


>AE014296-1694|AAF50238.1| 1639|Drosophila melanogaster CG3322-PA
            protein.
          Length = 1639

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
 Frame = +2

Query: 326  NTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMG---GYSCKW 496
            N  SG    +C C     + S  +  S +C     HCR      R   C     G+S + 
Sbjct: 946  NIRSGNGCENCLCDPVGSYNSTCDRYSGQC-----HCRPGVMGQRCDQCENYFYGFSSEG 1000

Query: 497  SHQCRVAEDGRPGCRGDQSG 556
               C   E G  G + DQ+G
Sbjct: 1001 CKPCECDESGSKGFQCDQNG 1020


>AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-PB,
           isoform B protein.
          Length = 2133

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 339 PELVLEQSSAPSSSAMPGTPPXXXXXSHTPFWVS 238
           P  V++QS+AP++ ++P  PP      H+P  +S
Sbjct: 652 PSRVIQQSAAPAAISIPSAPPPPPPAIHSPLDLS 685


>M33753-1|AAA28428.1| 2146|Drosophila melanogaster crumbs protein
           protein.
          Length = 2146

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 596 VARRTL*KQNAVCRQ-TDRPCSQVCHLLQLCTGATTCSCTHPYTDGTC 456
           V  + L  +N VC Q   +PC      + L  G   C CT  +T  TC
Sbjct: 596 VQNQCLCPENKVCNQCATQPCQNGGECVDLPNGDYECKCTRGWTGRTC 643


>AE014297-3522|AAF56276.1| 2146|Drosophila melanogaster CG6383-PA,
           isoform A protein.
          Length = 2146

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 596 VARRTL*KQNAVCRQ-TDRPCSQVCHLLQLCTGATTCSCTHPYTDGTC 456
           V  + L  +N VC Q   +PC      + L  G   C CT  +T  TC
Sbjct: 596 VQNQCLCPENKVCNQCATQPCQNGGECVDLPNGDYECKCTRGWTGRTC 643


>AE014297-3521|ABI31202.1| 2189|Drosophila melanogaster CG6383-PB,
           isoform B protein.
          Length = 2189

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 596 VARRTL*KQNAVCRQ-TDRPCSQVCHLLQLCTGATTCSCTHPYTDGTC 456
           V  + L  +N VC Q   +PC      + L  G   C CT  +T  TC
Sbjct: 639 VQNQCLCPENKVCNQCATQPCQNGGECVDLPNGDYECKCTRGWTGRTC 686


>AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC,
           isoform C protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +2

Query: 44  HQSLHHYEG--EVSKHSIPWLSTPDSIH*NLICRMAVV----VFLKVNSLESEEQQERHH 205
           HQ  H      +V +     +++    H N +CR  V     + LKV +L  ++Q+++ H
Sbjct: 581 HQQQHQRSSPAQVQQQQQQQMNSSRQSH-NDMCRQVVTTPMGMQLKVETLPQQQQKQQQH 639

Query: 206 KTEQTHGLRQGETQ 247
           + +Q    +QG +Q
Sbjct: 640 QQQQQQQQQQGRSQ 653


>AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB,
           isoform B protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +2

Query: 44  HQSLHHYEG--EVSKHSIPWLSTPDSIH*NLICRMAVV----VFLKVNSLESEEQQERHH 205
           HQ  H      +V +     +++    H N +CR  V     + LKV +L  ++Q+++ H
Sbjct: 581 HQQQHQRSSPAQVQQQQQQQMNSSRQSH-NDMCRQVVTTPMGMQLKVETLPQQQQKQQQH 639

Query: 206 KTEQTHGLRQGETQ 247
           + +Q    +QG +Q
Sbjct: 640 QQQQQQQQQQGRSQ 653


>AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA,
           isoform A protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +2

Query: 44  HQSLHHYEG--EVSKHSIPWLSTPDSIH*NLICRMAVV----VFLKVNSLESEEQQERHH 205
           HQ  H      +V +     +++    H N +CR  V     + LKV +L  ++Q+++ H
Sbjct: 581 HQQQHQRSSPAQVQQQQQQQMNSSRQSH-NDMCRQVVTTPMGMQLKVETLPQQQQKQQQH 639

Query: 206 KTEQTHGLRQGETQ 247
           + +Q    +QG +Q
Sbjct: 640 QQQQQQQQQQGRSQ 653


>BT030179-1|ABN49318.1|   82|Drosophila melanogaster IP17830p
           protein.
          Length = 82

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -2

Query: 438 LQCGPSRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPPXXXXXS 259
           +Q  P  P R  R     P  +V+VQ+Q     P +V++Q+  P     P  PP      
Sbjct: 22  VQIAPPWPRRHHRP----PPQVVVVQQQAPPPPPVMVVQQAPPPYYQNPPPPPPPGSSHY 77

Query: 258 HTP 250
           H P
Sbjct: 78  HNP 80


>AE014297-3684|AAF56376.1| 2768|Drosophila melanogaster CG13648-PA
           protein.
          Length = 2768

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 572 QNAVCRQTDRPCS-QVCHLLQLCTGATTCSCTHPYTDGTCCPYTALC 435
           ++  C + D  C+ Q C +  +     +C    P  +G CCP   +C
Sbjct: 235 EHCYCMRGDIVCAVQECEVPMMAANGKSCRAM-PAAEGECCPSNYVC 280


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,315,978
Number of Sequences: 53049
Number of extensions: 680633
Number of successful extensions: 3225
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3205
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)