Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h02
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.8  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   5.4  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   7.1  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 302 YNFLTVFFFYYNCICFH*AGYIHAFET 222
           Y F   FFF+ +C  FH A +IH +++
Sbjct: 76  YWFFFFFFFFSHCRRFHIAIFIHPYDS 102


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 663 AAFQVLVDPNLALDHGRPPMMTSDLINI 580
           A  Q LVDP LA D G  P    DL+ +
Sbjct: 375 ATCQSLVDPELADDEGANPTGLYDLVGV 402


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 245 GYIHAFETALYIVALLIVFTY*LMIIITYSLFVHI 141
           GYI  F   +YI  ++++FT  L+I I + + V +
Sbjct: 327 GYI--FNKPIYIAFIILLFTLQLLIYIWFGMIVKV 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,699
Number of Sequences: 5004
Number of extensions: 46463
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)