Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h02
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    36   0.028
06_03_0805 + 24775346-24775543,24775643-24775858,24775930-247759...    30   1.8  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    28   9.7  

>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = -2

Query: 788 AAFKDVTSNPANFIKYQNNPKIAAVIA 708
           AA +DV +NPA+F ++Q NPK+  +IA
Sbjct: 602 AALQDVMNNPASFARHQANPKVGPIIA 628


>06_03_0805 +
           24775346-24775543,24775643-24775858,24775930-24775970,
           24776510-24776551,24777019-24777055,24779796-24780092
          Length = 276

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 566 VKDYEILIKSDVIIGGRPWSSARFGSTKTWKAACRSTRTSTKFC 697
           V+ Y I     V + GRP +    G T T +  CRS   S +FC
Sbjct: 90  VQTYVINSAKIVFLNGRPQARPGKGVTNTCEICCRSLPDSFRFC 133


>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 209  QCTVLFQMHVCSPLNENICNYNKKKKLLESYIM 307
            QC +L  ++VCS  NE +   N+    +E YI+
Sbjct: 1396 QCAILVILYVCSFYNERLAADNQILASVEQYIL 1428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,827,008
Number of Sequences: 37544
Number of extensions: 234314
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)