Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16h02
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   9.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   9.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   9.9  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 395 DGPLFDCLSNVGSRMTKNFR*QMKKNLI 478
           D   +DCL N    ++  F  +M  NLI
Sbjct: 92  DDKFYDCLKNSADTISSYFVGKMYFNLI 119


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 652 LESRLQVHQNVYQVLLVN 705
           L S L+ H NVYQ    N
Sbjct: 32  LNSHLKSHSNVYQYRCAN 49


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 395 DGPLFDCLSNVGSRMTKNFR*QMKKNLI 478
           D   +DCL N    ++  F  +M  NLI
Sbjct: 97  DDKFYDCLKNSADTISSYFVGKMYFNLI 124


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 395 DGPLFDCLSNVGSRMTKNFR*QMKKNLI 478
           D   +DCL N    ++  F  +M  NLI
Sbjct: 97  DDKFYDCLKNSADTISSYFVGKMYFNLI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,737
Number of Sequences: 438
Number of extensions: 3488
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)