Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g23
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.55 
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    27   3.0  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   5.2  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   5.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   9.0  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   9.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.0  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 261 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 169
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 729 IINELCTNIRIKNGFVYV-LHKIHKVIDRHKSEVSLCCVV 613
           + +++CT + +   F +  +HK+ K++DR    +  C ++
Sbjct: 13  LFDDVCTCLLVDKVFYWSQIHKVRKLVDRSIERMESCSII 52


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 711 TNIRIKNGFVYVLHKIHKVIDRHKSEVSLCCVV 613
           T I   +GF Y+L  +H+++D+ +S+ S C +V
Sbjct: 707 TEISGSSGFQYILFILHQLLDK-ESDDSACFLV 738


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 110 IMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPP 6
           +  ATV    N +    AS  Q I V  F+YN+PP
Sbjct: 147 LFCATVQISGNEIYIASASAFQQIYVWKFNYNNPP 181


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 482 TLWTAFKTTEAHEVVYEMKLFQA 414
           +L T   TTE HE  Y  KL +A
Sbjct: 383 SLTTGLSTTEGHETGYSRKLHEA 405


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 643 VSVDNLVYFVQHVNK---PIFNSYISAQFIDYIQMLTKVYC 756
           +++ N VYFV+H+ K    IF  Y++  FI Y++   +V C
Sbjct: 138 IAIANGVYFVKHITKFSCEIFGLYVA--FI-YLEKGVQVLC 175


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 67   LVKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPIT 189
            L+ + FKD+ +  + Y   ++ L + L +  + ++HS PIT
Sbjct: 1732 LLLMDFKDNDLVGVGYLRILSCLLVSLPAMVYTYEHSDPIT 1772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,667
Number of Sequences: 5004
Number of extensions: 63068
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)