Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g22
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   1.7  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    24   2.3  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   3.0  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    23   5.3  

>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 113 RRSKLSNADVANLQSVSEVNDLKTQIISIVPRN 15
           +RS+L   +  NLQ V  +NDL+++   +   N
Sbjct: 39  KRSQLHKEEQINLQLVYAINDLRSKTKELKAEN 71


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 113 RRSKLSNADVANLQSVSEVNDLKTQIIS 30
           +R  L  +D+AN  S SE+ D    IIS
Sbjct: 160 QRRTLQRSDIANAVSKSEMYDFLIDIIS 187


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 101 LSNADVANLQSVSEVNDLKTQIISIVPRNIVNR 3
           LS +DV N ++     D+  +  +  P+N VN+
Sbjct: 61  LSESDVENAKNNEHTYDIDNKNFNFEPKNSVNK 93


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 13  IFRGTIEII*VFKSFTSET 69
           IFR T+E++ V++SF  ++
Sbjct: 81  IFRDTVELLCVYQSFVKKS 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,952
Number of Sequences: 5004
Number of extensions: 4694
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)