Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g19
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...   199   2e-51
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...   186   1e-47
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337     28   7.3  
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911     28   9.6  
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379...    28   9.6  

>01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,
            7125424-7125572,7126126-7126465,7126759-7127090,
            7127327-7127860
          Length = 532

 Score =  199 bits (485), Expect = 2e-51
 Identities = 111/264 (42%), Positives = 171/264 (64%), Gaps = 9/264 (3%)
 Frame = -3

Query: 776  YYVGFAYMMMRRYADAIRTLSXALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAICLV 597
            Y+ GFA +MMRRYA+AIR  +  LLY+ + KQ +  +S Q DQI K+ EQMY  LA+CL 
Sbjct: 278  YHYGFANLMMRRYAEAIREFNKILLYILKYKQ-YHQKSPQYDQILKKNEQMYAFLAVCLS 336

Query: 596  LHPQ--CVDESIQQVLREKNYHEKMFKMQYGD---LGEFESCFTFACPKFLSACPPPIE- 435
            L PQ   +DE++   L+EK Y++KM KMQ  D      ++  F++ACPKF++  PP ++ 
Sbjct: 337  LCPQHNLIDENVSTQLKEK-YNDKMTKMQRFDEETYAAYDELFSYACPKFITPSPPALDQ 395

Query: 434  PGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAA 255
            P  NY +DA + Q ++F+ EV+QQ++L  IRSYLKLY+T+ +AKLA +M     + R  A
Sbjct: 396  PLTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYSTITIAKLAQYMEVDEATLR--A 453

Query: 254  REHAALAIH---LLCFKHKMKNVVWTKGPSGLDGKFQSGSELDFYIDNDMIHIADTKVAH 84
             ++ +  ++   L+ +KHKM  V         +GK  S ++ DFYI  D+IH+ ++K   
Sbjct: 454  MKNLSQYLYRSILMTYKHKMHAV-------DNNGKIVSSADFDFYIKEDVIHVMESKPIK 506

Query: 83   RYGDFFIRKLLKFEELNRKLHHIK 12
            R+GD+F+R++LKFEE+  +L  ++
Sbjct: 507  RHGDYFLRQILKFEEMIGELEKVQ 530


>05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,
            7663356-7663449,7663533-7663681,7664525-7664864,
            7666417-7666748,7667348-7667821
          Length = 513

 Score =  186 bits (454), Expect = 1e-47
 Identities = 112/275 (40%), Positives = 166/275 (60%), Gaps = 18/275 (6%)
 Frame = -3

Query: 782  TSYYVGFAYMMMRRYADAIRTLSXALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAIC 603
            T Y+ GFA +MMRRY D IR  +  LLY+ + KQ +   S Q DQ+ K+ EQMY LLAIC
Sbjct: 256  TIYHYGFASLMMRRYIDGIREFNKILLYILKCKQ-YHQNSPQYDQLLKKNEQMYALLAIC 314

Query: 602  LVLHPQ--CVDESIQQVLREKNYHEKMFKM-QYGD--LGEFESCFTFACPKFLSACPPPI 438
            L L PQ   +DE++   L+EK Y +KM KM +Y D     ++  F++ACPKF++A PP +
Sbjct: 315  LSLCPQDKLIDENVGTQLKEK-YGDKMTKMHRYDDEAYAIYDELFSYACPKFITASPPVL 373

Query: 437  -EPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERD 261
             EP  NY +DA + Q ++F+ EV+QQ++L  IRSYLKLY+T+ + KLA +M         
Sbjct: 374  REPYTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYSTITIGKLAKYMDV------- 426

Query: 260  AAREHAALAIHLLCFKHKMKNVVWTKGPSGLDGKFQSGSELDFYID------------ND 117
               +   L   L+ +KHKM ++         DGK  S ++ DFYID             D
Sbjct: 427  ---DEVTLRTILMTYKHKMHSI-------DSDGKVISSADFDFYIDECMQQPLVWFPAED 476

Query: 116  MIHIADTKVAHRYGDFFIRKLLKFEELNRKLHHIK 12
            +IH+ ++K+   +GD+F+R++LKFEE+  +L  ++
Sbjct: 477  IIHVVESKLTKNHGDYFLRQILKFEEMITQLDKVQ 511


>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
          Length = 200

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 302 LAAFMSAARGSERDAAREHAALAIHLLCFKHKMKNVVW 189
           LA F   A G+        AA A+HLLCF       VW
Sbjct: 6   LAVFFLLAGGAGLGMTAAAAAKAVHLLCFATSWGVTVW 43


>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
          Length = 575

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -1

Query: 634 PSKCTIYWPFVWSCIRSALMNPSSRCFEKRTTMRRCLKCNMET*VNSRAALLSRAPN 464
           P  CT      ++CI+  +   S      R+   R L+ N    V++ A +L R PN
Sbjct: 175 PDSCTSLVSLNFACIKGEVNAGSLERLVSRSPNLRSLRLNRSVSVDTLAKILLRTPN 231


>02_01_0524 +
           3798019-3798265,3798419-3798651,3798765-3799014,
           3799104-3799249,3799372-3799577,3799721-3799845,
           3800154-3800734
          Length = 595

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 422 YGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKL 327
           YGR  +    +   +E++Q+ M PT++S++ L
Sbjct: 395 YGRAGLHEDAEAVFEELKQRGMSPTMKSHMLL 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,226,296
Number of Sequences: 37544
Number of extensions: 556372
Number of successful extensions: 1492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)