Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g19
         (784 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089607-1|AAL90345.1|  539|Drosophila melanogaster RE21692p pro...   406   e-113
AE014296-2102|AAF49952.1|  539|Drosophila melanogaster CG5642-PA...   406   e-113
AE014134-2150|AAF53159.2|  270|Drosophila melanogaster CG14947-P...    30   4.1  
X04269-1|CAA27820.1|  163|Drosophila melanogaster Sgs-5 protein.       29   9.5  
AY118986-1|AAM50846.1|  163|Drosophila melanogaster LP02306p pro...    29   9.5  
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    29   9.5  
AF241649-1|AAF44704.1|  366|Drosophila melanogaster titin protein.     29   9.5  
AF135167-1|AAF62351.1|  366|Drosophila melanogaster titin protein.     29   9.5  
AE014297-2372|AAF55436.1|  163|Drosophila melanogaster CG7596-PA...    29   9.5  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    29   9.5  

>AY089607-1|AAL90345.1|  539|Drosophila melanogaster RE21692p protein.
          Length = 539

 Score =  406 bits (1000), Expect = e-113
 Identities = 191/259 (73%), Positives = 221/259 (85%), Gaps = 1/259 (0%)
 Frame = -3

Query: 782  TSYYVGFAYMMMRRYADAIRTLSXALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAIC 603
            TSYYVGFAYMMMRRYADAIRT S  LLY+QRTKQL+S+RSYQNDQINKQ EQMYHLLAIC
Sbjct: 286  TSYYVGFAYMMMRRYADAIRTFSDILLYIQRTKQLYSTRSYQNDQINKQAEQMYHLLAIC 345

Query: 602  LVLHPQCVDESIQQVLREKNYHEKMFKMQYGDLGEFESCFTFACPKFLSACPPPIE-PGA 426
            LVLHPQC+DESIQQVLREKNYH+ MFKMQ GDL  F+S F FACP+F+S CPP ++ P  
Sbjct: 346  LVLHPQCIDESIQQVLREKNYHDAMFKMQCGDLEVFKSFFVFACPRFVSPCPPAVDAPMD 405

Query: 425  NYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAREH 246
            +Y +D ++HQ QVFMDEVRQQK LPT RSYLKLYTTLP+ KLA+F+     SE D ++  
Sbjct: 406  DYVKDPMEHQLQVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFID-PNASEDDVSK-- 462

Query: 245  AALAIHLLCFKHKMKNVVWTKGPSGLDGKFQSGSELDFYIDNDMIHIADTKVAHRYGDFF 66
              L I LLCFKHKM+N+VW+KGPSGL+G F+SGSELDFYID+DMIHIADTKV+HRYGDFF
Sbjct: 463  --LLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFF 520

Query: 65   IRKLLKFEELNRKLHHIKI 9
            +RK+LKF +LNRKL +I I
Sbjct: 521  VRKILKFNDLNRKLKNINI 539


>AE014296-2102|AAF49952.1|  539|Drosophila melanogaster CG5642-PA
            protein.
          Length = 539

 Score =  406 bits (1000), Expect = e-113
 Identities = 191/259 (73%), Positives = 221/259 (85%), Gaps = 1/259 (0%)
 Frame = -3

Query: 782  TSYYVGFAYMMMRRYADAIRTLSXALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAIC 603
            TSYYVGFAYMMMRRYADAIRT S  LLY+QRTKQL+S+RSYQNDQINKQ EQMYHLLAIC
Sbjct: 286  TSYYVGFAYMMMRRYADAIRTFSDILLYIQRTKQLYSTRSYQNDQINKQAEQMYHLLAIC 345

Query: 602  LVLHPQCVDESIQQVLREKNYHEKMFKMQYGDLGEFESCFTFACPKFLSACPPPIE-PGA 426
            LVLHPQC+DESIQQVLREKNYH+ MFKMQ GDL  F+S F FACP+F+S CPP ++ P  
Sbjct: 346  LVLHPQCIDESIQQVLREKNYHDAMFKMQCGDLEVFKSFFVFACPRFVSPCPPAVDAPMD 405

Query: 425  NYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAREH 246
            +Y +D ++HQ QVFMDEVRQQK LPT RSYLKLYTTLP+ KLA+F+     SE D ++  
Sbjct: 406  DYVKDPMEHQLQVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFID-PNASEDDVSK-- 462

Query: 245  AALAIHLLCFKHKMKNVVWTKGPSGLDGKFQSGSELDFYIDNDMIHIADTKVAHRYGDFF 66
              L I LLCFKHKM+N+VW+KGPSGL+G F+SGSELDFYID+DMIHIADTKV+HRYGDFF
Sbjct: 463  --LLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFF 520

Query: 65   IRKLLKFEELNRKLHHIKI 9
            +RK+LKF +LNRKL +I I
Sbjct: 521  VRKILKFNDLNRKLKNINI 539


>AE014134-2150|AAF53159.2|  270|Drosophila melanogaster CG14947-PA
           protein.
          Length = 270

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 739 TPTPSAPXLXRCYTCNALNNCSPPVPTRMIRSTNRP-SKCTIYW 611
           +P PS   + RC+ CN  +  S P+P     +++ P S C   W
Sbjct: 101 SPPPSKSKISRCFKCNRGSRVS-PIPEETDENSSTPQSSCLQLW 143


>X04269-1|CAA27820.1|  163|Drosophila melanogaster Sgs-5 protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 673 PPVPTRMIRSTNRPSKCTIYW-PFVWSCIRSALMNPSSRCFEKRTTMR 533
           P + + +  ST+ PSKC IY+  + W     AL +   RCF+    M+
Sbjct: 35  PEIESEIKNSTSVPSKCNIYYRNYQW-----ALQDCVCRCFQNECLMQ 77


>AY118986-1|AAM50846.1|  163|Drosophila melanogaster LP02306p
           protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 673 PPVPTRMIRSTNRPSKCTIYW-PFVWSCIRSALMNPSSRCFEKRTTMR 533
           P + + +  ST+ PSKC IY+  + W     AL +   RCF+    M+
Sbjct: 35  PEIESEIKNSTSVPSKCNIYYRNYQW-----ALQDCVCRCFQNECLMQ 77


>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 186  SPNYVLHFVLEAEQVNGESRMLTCRVT 266
            SP +V   V   E ++GE+ +LTC+VT
Sbjct: 6941 SPRFVEELVQPVEVMDGEALLLTCQVT 6967


>AF241649-1|AAF44704.1|  366|Drosophila melanogaster titin protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 186 SPNYVLHFVLEAEQVNGESRMLTCRVT 266
           SP +V   V   E ++GE+ +LTC+VT
Sbjct: 307 SPRFVEELVQPVEVMDGEALLLTCQVT 333


>AF135167-1|AAF62351.1|  366|Drosophila melanogaster titin protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 186 SPNYVLHFVLEAEQVNGESRMLTCRVT 266
           SP +V   V   E ++GE+ +LTC+VT
Sbjct: 307 SPRFVEELVQPVEVMDGEALLLTCQVT 333


>AE014297-2372|AAF55436.1|  163|Drosophila melanogaster CG7596-PA
           protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 673 PPVPTRMIRSTNRPSKCTIYW-PFVWSCIRSALMNPSSRCFEKRTTMR 533
           P + + +  ST+ PSKC IY+  + W     AL +   RCF+    M+
Sbjct: 35  PEIESEIKNSTSVPSKCNIYYRNYQW-----ALQDCVCRCFQNECLMQ 77


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
            isoform C protein.
          Length = 18074

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 186  SPNYVLHFVLEAEQVNGESRMLTCRVT 266
            SP +V   V   E ++GE+ +LTC+VT
Sbjct: 6941 SPRFVEELVQPVEVMDGEALLLTCQVT 6967


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,264,224
Number of Sequences: 53049
Number of extensions: 918219
Number of successful extensions: 2287
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2281
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)