Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16g19
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical p... 190 1e-48
U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical p... 190 1e-48
U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical pr... 32 0.40
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 32 0.40
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 29 2.8
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 29 3.7
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 29 3.7
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 29 3.7
>U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical
protein C17G10.9a protein.
Length = 537
Score = 190 bits (463), Expect = 1e-48
Identities = 109/262 (41%), Positives = 152/262 (58%), Gaps = 5/262 (1%)
Frame = -3
Query: 776 YYVGFAYMMMRRYADAIRTLSXALLYMQRTK----QLFSSRSYQNDQINKQTEQMYHLLA 609
Y+VGF+++MMR Y +A + LLY+QRTK Q S +++Q D I K +Q++HLLA
Sbjct: 285 YFVGFSHLMMRNYGEATKMFVNCLLYIQRTKSVQNQQPSKKNFQYDVIGKTWDQLFHLLA 344
Query: 608 ICLVLHPQCVDESIQQVLREKNYHEKMFKMQYGDLGEFESCFTFACPKFLSACPPPIEPG 429
ICL + PQ +DESI L E+ E+M M G++ EF + F CPKFLS E G
Sbjct: 345 ICLAIQPQRIDESIASQLSER-CGERMMHMANGNIDEFRNAFATGCPKFLSPTTVVYE-G 402
Query: 428 ANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAARE 249
N ++ + QTQ F++ + Q LP +R YLKLYTTLP KLA+FM D E
Sbjct: 403 VNQSKEPLLRQTQSFLEGIESQMALPVLRGYLKLYTTLPTKKLASFM--------DVDDE 454
Query: 248 HAALAI-HLLCFKHKMKNVVWTKGPSGLDGKFQSGSELDFYIDNDMIHIADTKVAHRYGD 72
H I LL +K + + GPS D + +++DFY+D DMI+IADTKVA G+
Sbjct: 455 HYDSFIGKLLTYKMIVNELGKEAGPSSADDD-EPQTDIDFYVDRDMINIADTKVARHVGE 513
Query: 71 FFIRKLLKFEELNRKLHHIKIK 6
FIR + K +E+ L + I+
Sbjct: 514 HFIRHIQKLQEVQDVLKRLDIQ 535
>U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical
protein C17G10.9b protein.
Length = 535
Score = 190 bits (463), Expect = 1e-48
Identities = 109/262 (41%), Positives = 152/262 (58%), Gaps = 5/262 (1%)
Frame = -3
Query: 776 YYVGFAYMMMRRYADAIRTLSXALLYMQRTK----QLFSSRSYQNDQINKQTEQMYHLLA 609
Y+VGF+++MMR Y +A + LLY+QRTK Q S +++Q D I K +Q++HLLA
Sbjct: 283 YFVGFSHLMMRNYGEATKMFVNCLLYIQRTKSVQNQQPSKKNFQYDVIGKTWDQLFHLLA 342
Query: 608 ICLVLHPQCVDESIQQVLREKNYHEKMFKMQYGDLGEFESCFTFACPKFLSACPPPIEPG 429
ICL + PQ +DESI L E+ E+M M G++ EF + F CPKFLS E G
Sbjct: 343 ICLAIQPQRIDESIASQLSER-CGERMMHMANGNIDEFRNAFATGCPKFLSPTTVVYE-G 400
Query: 428 ANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAARE 249
N ++ + QTQ F++ + Q LP +R YLKLYTTLP KLA+FM D E
Sbjct: 401 VNQSKEPLLRQTQSFLEGIESQMALPVLRGYLKLYTTLPTKKLASFM--------DVDDE 452
Query: 248 HAALAI-HLLCFKHKMKNVVWTKGPSGLDGKFQSGSELDFYIDNDMIHIADTKVAHRYGD 72
H I LL +K + + GPS D + +++DFY+D DMI+IADTKVA G+
Sbjct: 453 HYDSFIGKLLTYKMIVNELGKEAGPSSADDD-EPQTDIDFYVDRDMINIADTKVARHVGE 511
Query: 71 FFIRKLLKFEELNRKLHHIKIK 6
FIR + K +E+ L + I+
Sbjct: 512 HFIRHIQKLQEVQDVLKRLDIQ 533
>U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical
protein F56A3.2 protein.
Length = 443
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 469 PNSYRRVPRPLNPVPTMAVMLSNTRPKSLWTRSVNKKCFRPYVPI*NYTPPSR 311
P VP + P ++ + PKS+ RSV+ CF P V N P ++
Sbjct: 56 PEDTDTVPLTIPSTPALSGKFDSKTPKSVRRRSVSMSCFTPIVETINQPPTNQ 108
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 32.3 bits (70), Expect = 0.40
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 3/141 (2%)
Frame = -3
Query: 548 KNYHEKMFKMQYGDLGEFESCFTFACPKFLSACPPPIEPGANYGRDAVKHQTQVFMDEVR 369
K+ HEK ++ + + + A PKF S P + G + ++ T +D
Sbjct: 2126 KSSHEK--RLAHSESSSWRKSLARA-PKFDSKDPKGAKQGEAFEGTLIRKHTYESLDRKA 2182
Query: 368 QQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKN 198
RS+ KLY L +L+ + E AL ++++ K KN
Sbjct: 2183 AN------RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKN 2236
Query: 197 VVWTKGPSGLDGKFQSGSELD 135
V+ + P G + FQ GSE D
Sbjct: 2237 VLSLRLPIGAEYLFQCGSEED 2257
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 29.5 bits (63), Expect = 2.8
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 3/141 (2%)
Frame = -3
Query: 548 KNYHEKMFKMQYGDLGEFESCFTFACPKFLSACPPPIEPGANYGRDAVKHQTQVFMDEVR 369
K+ HEK ++ + + + A KF S P + G + ++ T +D
Sbjct: 2126 KSSHEK--RLAHSESSSWRKSLARAA-KFDSKDPKGAKQGEAFEGTLIRKHTYESLDRKA 2182
Query: 368 QQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKN 198
RS+ KLY L +L+ + E AL ++++ K KN
Sbjct: 2183 AN------RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKN 2236
Query: 197 VVWTKGPSGLDGKFQSGSELD 135
V+ + P G + FQ GSE D
Sbjct: 2237 VLSLRLPIGAEYLFQCGSEED 2257
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -3
Query: 344 RSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKNVVWTKGPS 174
RS+ KLY L +L+ + E AL ++++ K KNV+ + P
Sbjct: 2140 RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKNVLSLRLPI 2199
Query: 173 GLDGKFQSGSELD 135
G + FQ GSE D
Sbjct: 2200 GAEYLFQCGSEED 2212
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -3
Query: 344 RSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKNVVWTKGPS 174
RS+ KLY L +L+ + E AL ++++ K KNV+ + P
Sbjct: 2140 RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKNVLSLRLPI 2199
Query: 173 GLDGKFQSGSELD 135
G + FQ GSE D
Sbjct: 2200 GAEYLFQCGSEED 2212
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -3
Query: 344 RSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKNVVWTKGPS 174
RS+ KLY L +L+ + E AL ++++ K KNV+ + P
Sbjct: 2140 RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKNVLSLRLPI 2199
Query: 173 GLDGKFQSGSELD 135
G + FQ GSE D
Sbjct: 2200 GAEYLFQCGSEED 2212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,234,652
Number of Sequences: 27780
Number of extensions: 446723
Number of successful extensions: 1272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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