Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g18
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   2.4  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   4.3  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   4.3  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   7.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.8  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.8  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.8  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   9.8  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 734 DDKATFESLFH-LLNYVTSLEVNSDGQMLKLDEGDKIEDFDESTL 603
           +DK+  +S F  L   ++ L VNS GQ+ K D  +    F ES+L
Sbjct: 621 NDKSLKQSPFQKLTRRLSDLSVNSSGQISKQDFDNSNSIFSESSL 665


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 400 TKNIKNMSCLCITNAVNATIV 462
           T  +KN+ C CITN V+  I+
Sbjct: 664 TNYLKNLLCCCITNLVSLAIL 684


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 10  LFTIMSKPNV---LTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNT 171
           LF I++K N+          I   + K   + +Q   L E +QP   +PAQLT ++T
Sbjct: 61  LFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDT 117


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 522 VYEQKKQQF*SNNNGFVCNKHNCGVYSICYTQTTHIFYIFRNLPNDYILL 373
           +Y  KK++   ++N F+C       Y I    + H+FY+F++ P  Y  L
Sbjct: 150 LYSCKKEE---SSNKFLCPLSK---YLIYLFLSIHLFYVFQSFPWTYFCL 193


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 785  REIIEFMPEFFSDMVETDDKATFESLFHLL 696
            R +I F    F++++++  +  FE+L+H+L
Sbjct: 1271 RHLIGFQSRQFTNVLQSSAEVMFENLWHIL 1300


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 324 LKKNDLFTWNCVYHDERLNRIQKLGFSA*ALGV 226
           L+   LFTW C  + E  N +      A +LG+
Sbjct: 523 LEVQHLFTWTCELYSENFNTVISSFIIANSLGI 555


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 67  ETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 198
           E N ++ S   Q + + ESF     L    T+++  +S +QSIL
Sbjct: 371 ENNIQISSEYLQQHLIGESFDGNISLEPNSTEWDDDVSALQSIL 414


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 625 RILTNLLWWGKR*PLARYTLAWSL 554
           ++ TN LWWG R  L R +L +SL
Sbjct: 134 QVRTNTLWWG-RDRLGRRSLLYSL 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,279
Number of Sequences: 5004
Number of extensions: 64141
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)