Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g18
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-7|CAA97428.1|  416|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AY204176-1|AAO39180.1|  409|Caenorhabditis elegans nuclear recep...    29   4.0  
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U28409-5|AAC46591.1|  246|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   7.0  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    28   9.3  
AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    28   9.3  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    28   9.3  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    28   9.3  

>Z73103-7|CAA97428.1|  416|Caenorhabditis elegans Hypothetical
           protein C08F8.8 protein.
          Length = 416

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 767 MPEFFSDMVETDDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDKIEDFDEST 606
           MP    DM +   + T  SLF + N+  +L      +  + +EG+ IE+ D++T
Sbjct: 296 MPRLIQDMFKPPQQPTPTSLFPMANF--NLNFLLKQEKTETEEGEDIEEEDDAT 347


>AY204176-1|AAO39180.1|  409|Caenorhabditis elegans nuclear receptor
           NHR-67 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 767 MPEFFSDMVETDDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDKIEDFDEST 606
           MP    DM +   + T  SLF + N+  +L      +  + +EG+ IE+ D++T
Sbjct: 289 MPRLIQDMFKPPQQPTPTSLFPMANF--NLNFLLKQEKTETEEGEDIEEEDDAT 340


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/92 (22%), Positives = 39/92 (42%)
 Frame = -1

Query: 752 SDMVETDDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDKIEDFDESTLVGKALATSSL 573
           SD+   + K  F    HL+ Y+  +  N +G + K+D+   I D + S     +    SL
Sbjct: 349 SDIPNFEYKPRFPQKLHLIGYIVQIINNKNGILDKIDD---ISDKNSSDFKQISELIMSL 405

Query: 572 YTRMEFMQYTFRQNTILSMNKKNNNFNQIIMG 477
               E ++       ++ M +  N   +I+ G
Sbjct: 406 QHNFEVLRNGDMDGELIEMMEFQNVVPEIVSG 437


>U28409-5|AAC46591.1|  246|Caenorhabditis elegans Hypothetical
           protein T25D10.4 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 653 LKLDEGDKIEDFDESTLVGKALATSSLYTRMEFMQYTFRQNTIL 522
           L+ DE D+ ED  +S       A ++LY   E  Q+  RQN++L
Sbjct: 102 LEYDEEDEKEDKFDSGFSASMSAVTNLYVDDERPQFFSRQNSVL 145


>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 26/111 (23%), Positives = 45/111 (40%)
 Frame = -1

Query: 809 ESLDNTTSREIIEFMPEFFSDMVETDDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDK 630
           ES  N T+ E    + +  SD+      +      HL+ Y+  +  N +G + K+D+   
Sbjct: 357 ESFINKTT-EACGLVKDVNSDIPNLKYNSLLPQKLHLIGYIVQVINNKNGILDKIDD--- 412

Query: 629 IEDFDESTLVGKALATSSLYTRMEFMQYTFRQNTILSMNKKNNNFNQIIMG 477
           I D + S     +    SL    E ++    +  I  M K  N   +I+ G
Sbjct: 413 ISDNNSSDFKKISGLIMSLRHHFEILKSGDMKKEITEMMKYQNAIPEIVSG 463


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 1    NYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTD 162
            N +L  I  K N L +  D IAET+ KV+ ++     +      LD LPA+  D
Sbjct: 2720 NKLLAKIDEKLNSLPK--DQIAETHRKVEDIKVTKADIVAQIDVLDKLPAKDID 2771


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 486 YLIKIVVFFVHRQYCVLPKRVLH 554
           YL   ++FF++  YCVL K++ H
Sbjct: 208 YLFVAIMFFLYITYCVLIKKLAH 230


>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -1

Query: 749 DMVETDDKATFESLFHLLNYVT-SLEVNSDGQMLKLDEGDKIEDFDESTLVGKALATSSL 573
           D VETD   +FE+L H L  V    ++NS G +     GD +  +    L GK + T   
Sbjct: 415 DCVETDKPISFETLKHPLGLVAYQAKINSCGNLTIPSFGDFVHVY----LNGKYIDT--- 467

Query: 572 YTRMEFMQYTFRQNTILSMNKKNNNFNQIIM 480
            TR     Y   +N+++      N  N++ M
Sbjct: 468 LTR---RYYNLTRNSVIIEGCLENEENRLFM 495


>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
 Frame = -1

Query: 743 VETDDKATFESLFHLLNYVTSLE----VNSDGQMLK-LDEGDKIEDFDE--STLVGKALA 585
           +ET D ATFE L H L++V   E    +   G +L+ +  G K E  +E     +G    
Sbjct: 595 IETTDGATFEFLIHRLSHVNLTENEEKLVEHGYLLRAVSFGTKFEWKEELCREYMGFVTD 654

Query: 584 TSSLYTRMEF 555
             +L+TR+++
Sbjct: 655 NDTLHTRLQW 664


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
 Frame = -1

Query: 743 VETDDKATFESLFHLLNYVTSLE----VNSDGQMLK-LDEGDKIEDFDE--STLVGKALA 585
           +ET D ATFE L H L++V   E    +   G +L+ +  G K E  +E     +G    
Sbjct: 595 IETTDGATFEFLIHRLSHVNLTENEEKLVEHGYLLRAVSFGTKFEWKEELCREYMGFVTD 654

Query: 584 TSSLYTRMEF 555
             +L+TR+++
Sbjct: 655 NDTLHTRLQW 664


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
 Frame = -1

Query: 743 VETDDKATFESLFHLLNYVTSLE----VNSDGQMLK-LDEGDKIEDFDE--STLVGKALA 585
           +ET D ATFE L H L++V   E    +   G +L+ +  G K E  +E     +G    
Sbjct: 595 IETTDGATFEFLIHRLSHVNLTENEEKLVEHGYLLRAVSFGTKFEWKEELCREYMGFVTD 654

Query: 584 TSSLYTRMEF 555
             +L+TR+++
Sbjct: 655 NDTLHTRLQW 664


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,466,527
Number of Sequences: 27780
Number of extensions: 349939
Number of successful extensions: 861
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)