Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16g17
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 132 4e-32
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 106 4e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 103 4e-23
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 98 1e-21
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 90 4e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 83 6e-17
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 80 3e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 79 9e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 77 3e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 74 3e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 71 1e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 71 2e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 2e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 70 3e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 68 2e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 67 3e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 66 5e-12
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 64 2e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 64 2e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 4e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 59 6e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 54 3e-08
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 52 9e-08
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 49 9e-07
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 44 2e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 43 6e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 42 7e-05
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 42 7e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 34 0.020
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.32
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.3
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.3
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.3
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 5.2
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 6.9
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 6.9
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 6.9
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 6.9
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 9.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 132 bits (320), Expect = 4e-32
Identities = 57/99 (57%), Positives = 81/99 (81%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q ERD VL +F+ G++ I+VATDVA+RG+DV GI +V N+D+P ++EDY+HRIGRTGR+
Sbjct: 405 QDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAG 464
Query: 592 SKGTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMA 476
+KGT+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 465 AKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 106 bits (254), Expect = 4e-24
Identities = 50/99 (50%), Positives = 69/99 (69%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q+ER+ L F+ GR SI+VAT VA+RGLD+ + +VIN+D P +DY+HRIGRTGR+
Sbjct: 466 QRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG 525
Query: 592 SKGTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMA 476
+ G + AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 526 NTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 103 bits (246), Expect = 4e-23
Identities = 48/91 (52%), Positives = 65/91 (71%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q R + L FK G+ +LVATDVAARGLD+ ++ VIN +P + EDY+HRIGRTGR+
Sbjct: 452 QGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRAN 511
Query: 592 SKGTSYAFFTPSNSRQAKDLVSVLQEANQMI 500
+KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 512 TKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 97.9 bits (233), Expect = 1e-21
Identities = 41/101 (40%), Positives = 63/101 (62%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q +RD + +K G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+GRTGR+
Sbjct: 704 QHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAG 763
Query: 592 SKGTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 470
G + F TP + A D+ L+ + Q + +LQ++A +
Sbjct: 764 HTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 89.8 bits (213), Expect = 4e-19
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q +R+E L +F++G +L+ATD+ ARG+D G+K VINFD+P S YIHRIGRTGR+
Sbjct: 324 QAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAG 383
Query: 592 SKGTSYAFFTPSNSRQAKDLVSVLQEA 512
+ G + FFT + K + V++ +
Sbjct: 384 NTGQAVTFFTKEDGEYIKLIAGVMRSS 410
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 82.6 bits (195), Expect = 6e-17
Identities = 35/80 (43%), Positives = 54/80 (67%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q+ERD ++ F++G + +L+ TD+ ARG+DV + VIN+D P + E+YIHRIGR+GR
Sbjct: 296 QKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFG 355
Query: 592 SKGTSYAFFTPSNSRQAKDL 533
KG + F T + R +D+
Sbjct: 356 RKGVAINFVTNEDVRILRDI 375
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/80 (43%), Positives = 53/80 (66%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q +RD ++++F+ G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIGR GR
Sbjct: 294 QAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFG 353
Query: 592 SKGTSYAFFTPSNSRQAKDL 533
KG S F T + R +++
Sbjct: 354 RKGVSINFVTNDDVRMMREI 373
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 78.6 bits (185), Expect = 9e-16
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q++R+ + Q + A ILVATD+A RG+D+ + V+N++ S EDY HRIGRTGR+
Sbjct: 552 QEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAG 611
Query: 592 SKGTSYAFFTPSNSRQAKDL-VSVLQEANQMISPQLQS 482
GT+ F P ++ DL V + + A I +L++
Sbjct: 612 KSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRN 649
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 77.0 bits (181), Expect = 3e-15
Identities = 36/70 (51%), Positives = 47/70 (67%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q+ER L +F+ A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+GRT R+
Sbjct: 294 QRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAG 353
Query: 592 SKGTSYAFFT 563
G S + T
Sbjct: 354 RSGESISIVT 363
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 73.7 bits (173), Expect = 3e-14
Identities = 37/70 (52%), Positives = 44/70 (62%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q R L +FK G S LVATDVAARGLD+ + VIN+D P S+ YIHR+GRT R+
Sbjct: 321 QSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAG 380
Query: 592 SKGTSYAFFT 563
G S A T
Sbjct: 381 RAGKSIALVT 390
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 71.3 bits (167), Expect = 1e-13
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q+ER + FK+ I VATDV RG+D++ + VIN+D P+S + Y+HR+GR GR
Sbjct: 331 QEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFG 390
Query: 592 SKGTSYAFFTPSNSRQAKDLVSVLQEAN 509
+KG + F + Q D + E N
Sbjct: 391 TKGLAITFSSSEEDSQILDKIQERFEVN 418
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-S 596
QQ R ++F IL+ T+VAARGLD+ + +++ +D P+ DYIHR+GRT R +
Sbjct: 372 QQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGT 431
Query: 595 KSKGTSYAFFTPS 557
K G S F PS
Sbjct: 432 KGTGKSLMFLAPS 444
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 70.5 bits (165), Expect = 2e-13
Identities = 29/63 (46%), Positives = 46/63 (73%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q++R L F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y+HR+GRT R+
Sbjct: 540 QEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAG 599
Query: 592 SKG 584
G
Sbjct: 600 RSG 602
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 70.1 bits (164), Expect = 3e-13
Identities = 28/70 (40%), Positives = 45/70 (64%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q R+ V + F+ G LV +D+ RG+D+ + VINFD+P ++E Y+HRIGR+GR
Sbjct: 317 QSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 376
Query: 592 SKGTSYAFFT 563
+G + +F +
Sbjct: 377 HRGLAISFIS 386
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 67.7 bits (158), Expect = 2e-12
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q++R + L +FK +LV TDVAARG+D+ + +VI++ P++++ Y+HR GRT R+
Sbjct: 425 QKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARAN 484
Query: 592 SKGTSYAFFTPSNSRQAKDL 533
G S P Q K L
Sbjct: 485 EDGVSILMCGPKELSQLKRL 504
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 66.9 bits (156), Expect = 3e-12
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRAS---ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTG 602
QQ R L F S IL+ TDVAARGLD+ + V+ +D P S++DY+HRIGRT
Sbjct: 479 QQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTA 538
Query: 601 RSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQMISP 494
R+ G + F P S L S + AN + P
Sbjct: 539 RAGHNGAAIMFLLPKESEYINLLKSSV-SANILEQP 573
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.1 bits (154), Expect = 5e-12
Identities = 32/100 (32%), Positives = 57/100 (57%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q+ R + F+ G+ ++LV TDVA+RG+D+ + VIN+D+P + ++HR+GRT R+
Sbjct: 382 QEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAG 441
Query: 592 SKGTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMAD 473
G +Y+ ++ DL L S Q+++ +D
Sbjct: 442 RTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = -2
Query: 766 ERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK 587
+R + F++ ++ IL ATDV ARG+D I V+ P++++DYIHRIGRTGR+
Sbjct: 331 QRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKT 390
Query: 586 GTSY 575
G +Y
Sbjct: 391 GEAY 394
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/82 (39%), Positives = 40/82 (48%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q R EV +F R +L TD+ ARGLD + +VI D P + YIHR+GRT R
Sbjct: 321 QTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYN 380
Query: 592 SKGTSYAFFTPSNSRQAKDLVS 527
G + PS K L S
Sbjct: 381 RSGNALLLLLPSEEAFLKRLES 402
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
+ ER +++ +F G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R+
Sbjct: 473 RDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAG 532
Query: 592 SKGTSYAFFTPSNSRQAKDLVSVLQ 518
+G ++ LV L+
Sbjct: 533 REGFAWTLVQSHEGHHFSKLVKQLR 557
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 59.3 bits (137), Expect = 6e-10
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = -2
Query: 766 ERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYP------NSSEDYIHRIGRT 605
+RD ++ F+ G + +LV T+V ARG+DV + V+N+D P + Y+HRIGRT
Sbjct: 390 QRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 449
Query: 604 GRSKSKGTSYAF 569
GR G S F
Sbjct: 450 GRFGRVGVSINF 461
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -2
Query: 697 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 554
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = -2
Query: 772 QQERDEVLYQFKEG-RASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 596
Q R +FK+ + ++L TD+A+RGLD+ + +V+ D P + + HR GR GR+
Sbjct: 294 QSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRA 353
Query: 595 KSKGTSYAFFTPSNSRQAKDLVSV 524
G + + ++L+ V
Sbjct: 354 GRAGVAIVLLNDGREEEYEELLRV 377
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 52.0 bits (119), Expect = 9e-08
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q+ ++E + QF++G + L+AT + GLD+ + +I +D S + R+GRTGR K
Sbjct: 478 QKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR-K 536
Query: 592 SKGTSYAFFTPSNS----RQAKDLVSVLQE 515
KG Y T +AKD LQ+
Sbjct: 537 RKGYIYMLLTRGKEEAKWERAKDAYRTLQD 566
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 48.8 bits (111), Expect = 9e-07
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = -2
Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
Q ++ E + QF+ G + LVAT + GLD+ +I +D +S I R+GRTGR K
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKK 576
Query: 592 S 590
S
Sbjct: 577 S 577
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 766 ERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK 587
ER + +++ G I+VAT G+D +++VI+ +P S E Y GR GR
Sbjct: 781 ERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKP 840
Query: 586 GTSYAFFT 563
F++
Sbjct: 841 AHCIMFYS 848
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = -2
Query: 769 QERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 590
+ + + L++FK G+ ++L+AT VA G+DV VI F+ + Y+ GR S
Sbjct: 410 RRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMAS 469
Query: 589 K 587
K
Sbjct: 470 K 470
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 733 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 554
G+ I++AT G++ G++ V+++ P SS DY+ GR GR + F+ +
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 553 S 551
S
Sbjct: 1530 S 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 733 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 554
G+ I++AT G++ G++ V+++ P SS DY+ GR GR + F+ +
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 553 S 551
S
Sbjct: 1530 S 1530
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 34.3 bits (75), Expect = 0.020
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -2
Query: 769 QERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 599
QER ++ + G+ ++AT+ G+D+ + VI +P S + + GR GR
Sbjct: 597 QERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.32
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 646 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQMISP 494
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 733 GRASILVATDVAARGLDVDGIKYVINFDY 647
G ++VAT++A L V GI YV++ Y
Sbjct: 757 GVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 733 GRASILVATDVAARGLDVDGIKYVIN 656
G +++AT++A L +DGI YV++
Sbjct: 777 GGRKVVIATNIAETSLTIDGIYYVVD 802
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 266 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 379
H+IY+ S C + YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 769 QERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 656
+++ +V EG +VAT+VA + + I+YV++
Sbjct: 714 EDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 721 ILVATDVAARGLDVDGIKYVIN 656
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 721 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 560
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 679 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 545
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 629 LHPSY-WENWTFKIKRNIICFLYPFKFP 549
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 688 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 578
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,007
Number of Sequences: 5004
Number of extensions: 58401
Number of successful extensions: 177
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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