Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g17
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      101   1e-23
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.59 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.59 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  101 bits (241), Expect = 1e-23
 Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
 Frame = -2

Query: 772 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 593
           Q++R+E L  FK GR SILVAT VAARGLD+  + +VIN+D P   ++Y+HRIGRTGR  
Sbjct: 487 QRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVG 546

Query: 592 SKGTSYAFFTPSNSRQAK-DLVSVLQEANQMI 500
           ++G + +FF P      + DLV +L++ANQ +
Sbjct: 547 NRGRATSFFDPEEDAPLRGDLVRILKQANQSV 578


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 592 ILNVQFSQYDGCNPPTNLDNQNLLHI 669
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 592 ILNVQFSQYDGCNPPTNLDNQNLLHI 669
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 91  NFRVRMHYCKSWVESQ 138
           +FRV M   +SW+ES+
Sbjct: 31  DFRVDMFVRQSWIESR 46


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 448 TRRHHHRNGRPSTAVVG*SS 507
           T  HHH+NG   +++V  +S
Sbjct: 170 TLGHHHQNGATPSSLVSSAS 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,777
Number of Sequences: 438
Number of extensions: 3881
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)