Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g14
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   299   3e-82
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.3  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   3.1  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   3.1  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   3.1  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   4.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.3  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  299 bits (733), Expect = 3e-82
 Identities = 143/191 (74%), Positives = 160/191 (83%)
 Frame = -3

Query: 625 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 446
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 445 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVXTRGLCAIAQAESXRYKLIGGLAVRRACY 266
           EKGRRIRELT++VQKRF   E +VELYAEKV  RGLCA+AQ ES RYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 265 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNXVTRHVLIRQG 86
           GVLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D+++  TRHVL+RQG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182

Query: 85  VXGIKVKIMLP 53
           V G+KVKIMLP
Sbjct: 183 VLGVKVKIMLP 193


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -1

Query: 549 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 412
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 475 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVXTRGLCAI-AQAESXRYKL 299
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 298 IG 293
           +G
Sbjct: 784 LG 785


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
           GG   P RYRPG +   +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
           GG   P RYRPG +   +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
           GG   P RYRPG +   +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 196 GQRAKSMKFVDGLMIHSGDPCNDYVNXV 113
           G+R K + F D    H G P  DY++ V
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIHVV 245


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 357 FSAYNSTDCSGMLNRFCTTEVSSR 428
           + +Y S+DC G+L+R   T+   R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,972
Number of Sequences: 5004
Number of extensions: 50975
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)