Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16g14
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   331   2e-91
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    29   3.2  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    29   4.2  
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092...    29   4.2  
08_01_0346 - 3063440-3064189                                           28   7.3  
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     27   9.7  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  331 bits (814), Expect = 2e-91
 Identities = 161/196 (82%), Positives = 172/196 (87%)
 Frame = -3

Query: 613 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 434
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7   ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66

Query: 433 RIRELTSVVQKRFNIPEQSVELYAEKVXTRGLCAIAQAESXRYKLIGGLAVRRACYGVLR 254
           RIRELTSVVQKRFN PE  VELYAEKV  RGLCAIAQAES RYKL+GGLAVRRACYGVLR
Sbjct: 67  RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126

Query: 253 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNXVTRHVLIRQGVXGI 74
           F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y++   RHVL+RQGV GI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186

Query: 73  KVKIMLPWDQQGKNGP 26
           KVKIML WD +GK GP
Sbjct: 187 KVKIMLDWDPKGKQGP 202


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = +1

Query: 172 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 276
           T L  H   AA    Q H HGH      G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 552 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 448
           ++ SWPR    P W C S    RR L   P  R C+
Sbjct: 10  AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45


>01_01_1234 -
           10007446-10007940,10008030-10008125,10008980-10009253,
           10009381-10009682,10010078-10010123,10010319-10010368,
           10011124-10011268,10012051-10012229,10012327-10012485,
           10012636-10012887,10012972-10013097,10013197-10013525,
           10014183-10014252
          Length = 840

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 488 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 589
           R DG +PH  A   + G    ++    CL  P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801


>08_01_0346 - 3063440-3064189
          Length = 249

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 322 AESXRYKLIGGLAVRRACYGVLR 254
           A S    L+GG A   ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243


>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 142 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 237
           +QSG+       LIWH+  + C+I+    H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,021
Number of Sequences: 37544
Number of extensions: 370826
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)