Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16g14
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 324 4e-89
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 30 1.6
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 29 2.1
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 28 6.5
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.5
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 28 6.5
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 28 6.5
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 28 6.5
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 28 6.5
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 28 6.5
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 28 6.5
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 28 6.5
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 28 6.5
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 28 6.5
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 324 bits (795), Expect = 4e-89
Identities = 156/205 (76%), Positives = 176/205 (85%), Gaps = 1/205 (0%)
Frame = -3
Query: 628 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 452
MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 451 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVXTRGLCAIAQAESXRYKLIGGLAVRRA 272
LGE+GRRI+ELTSVVQKRF E SVELYAEKV RGLCA+AQ ES RYKL+GGLAVRRA
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 271 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNXVTRHVLIR 92
CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ RHV +R
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180
Query: 91 QGVXGIKVKIMLPWDQQGKNGPEEA 17
QGV GIKVKIMLP+D +G+NGP A
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNA 205
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 637 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 524
+A +I KK F GDG F E E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 637 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 524
+A +I KK F GDG F E E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 465 GHRVCSERKDAESVSSLP*YRSDSTFQSNL*NCMLKRW 352
G R C+ KD ++ +S D+ FQ + NC+ K W
Sbjct: 146 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNW 183
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 465 GHRVCSERKDAESVSSLP*YRSDSTFQSNL*NCMLKRW 352
G R C+ KD ++ +S D+ FQ + NC+ K W
Sbjct: 148 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNW 185
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -3
Query: 541 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 380
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -3
Query: 541 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 380
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 463 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAE 359
+ S+ G+KG+ +REL + + K ++ E++ + AE
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAE 430
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 356 GGYSWPLRYRPGRIXKIQAYRRSRCTSCLLWCSPF 252
GG P RYRPG + + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,609
Number of Sequences: 27780
Number of extensions: 298097
Number of successful extensions: 831
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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