Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16g04
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 29 0.56
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 29 0.74
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.2
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 3.0
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 27 3.9
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 6.9
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 6.9
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 6.9
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 9.1
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.1
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.56
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +3
Query: 459 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 572
DGFV++LPYD V + L R+G+ + W A F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 29.1 bits (62), Expect = 0.74
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 130 TNRNLFYKSIEDLIFKFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTES 303
T+ +Y+S + L+ RY +A+ + HP D L K +Q+ S + ++ ES
Sbjct: 134 THAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKELQKKSDDFEKRES 191
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 725 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 597
YL+ +L PN Y Q A + +DY E IRI+E V
Sbjct: 32 YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 478 SHMTRFTNDSNELVYSLWMFMIGQ 549
SH +F ND E Y W F+ Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 596 GMNNEYRISLAKKGGGCPIMNIHS 525
G++NE I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 85 LDSPAIGLQKQPLFETNRNLFYKSIEDLIFK 177
+DS +G ++E RNLFYK + + + K
Sbjct: 248 IDSGQVGGCAIDVYEGERNLFYKDLSNEVIK 278
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 13 NGISTKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKD 192
+GIST RLL A + LS P + + P ET+ F K I +L+ + D
Sbjct: 797 SGISTVRRLLSLVEAGNISLSSFPKSETLLAVLLAPTTETS---FLKEISNLLDRTGDSD 853
Query: 193 A 195
A
Sbjct: 854 A 854
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 107 KPMAGLSNGFSLNTTRLAKSCSSNLAFVD 21
KP G+ S +TT+ AKS SS + +D
Sbjct: 76 KPSVGIEKNPSFSTTKSAKSFSSTSSNID 104
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 9.1
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +3
Query: 618 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 716
+D GH + PP+ + +++A + +C ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +3
Query: 309 LINVLITMYSVLIRRTSEQRRVWCKLLYFENERNLN*DFLFFGRVCADVNDGF 467
L N+L+ + R C LL+F+ L ++ F VC + GF
Sbjct: 623 LNNILVASLKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCPHIEHGF 675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,641
Number of Sequences: 5004
Number of extensions: 65727
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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