Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16f20
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0133 + 961625-961709,961796-961869,962236-962325,963087-96...    29   3.6  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     28   8.3  

>02_01_0133 +
           961625-961709,961796-961869,962236-962325,963087-963164,
           963348-963412,963540-963732,963810-963900,963970-964034,
           964126-964284,964363-964368,964569-964678,964885-965080
          Length = 403

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 191 LPRRY*NKMCMHDNLCLLKCSLPIPQNRPYI 283
           LP  +    C +  LC+ K SL +P+  PY+
Sbjct: 125 LPNGWEENKCQNRTLCMEKLSLVLPETPPYV 155


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 526  HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 696
            H +  A   NL    +   N  F+ +  EY+P+G L A  H++G  ++  L+   D+++D
Sbjct: 846  HVLRMARHRNLIKILNTCSNLDFRALVLEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 904


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,084,618
Number of Sequences: 37544
Number of extensions: 401949
Number of successful extensions: 1012
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)