Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16f20
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099917-9|AAC68787.1|  445|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    29   2.4  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    29   4.3  
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical...    28   7.5  
U61948-3|AAB03145.1|  335|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    27   9.9  
AC006692-8|AAF39973.1|  431|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF099917-9|AAC68787.1|  445|Caenorhabditis elegans Hypothetical
           protein F54D10.9 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 486 PNSDAVGWWYNK-FCVITYVHRIMHRSVP 403
           P +D   WWYNK F V TY +++  R  P
Sbjct: 307 PAADIGRWWYNKPFNVQTYFNKVTCRRAP 335


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 384 LSEAVKKFIRLSKSDYDDRLHVDESYNCPRVIAEM-YGRFCGIGKEHFSKHKLSCMHI 214
           L E  +KF  L K   DDR  ++  Y+ P +I+   Y       KE+ +K+ L+ ++I
Sbjct: 83  LDEMAEKFTILKKITQDDRELLEMKYSSPEIISNCDYFHTFNALKENLAKNVLNKLNI 140


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 412 SMHYSVHISYHTKFIVPPSDSVAIRVEHVGDVQQF 516
           S HY   I+Y T  ++PPSD +A+  E +    ++
Sbjct: 134 SWHYLFIIAYLTSTLIPPSDHLAVYNETLAHYPEY 168


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 234 KLSCMHILFQYLRGKTTQEEKSFSCYTVIKD 142
           K+ C +ILF++L+G +  E     C TV KD
Sbjct: 130 KVLCGYILFEFLQGNSIFEAYEKLCVTVGKD 160


>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
           protein Y105C5B.2 protein.
          Length = 1044

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 534 HFMRNGKLLHIANVFNPNSDAVGWWYNKFC 445
           H  R+GK +H+ANV    SD  G    K C
Sbjct: 348 HMWRDGKAVHVANVKPRESDYCGGNMTKNC 377


>U61948-3|AAB03145.1|  335|Caenorhabditis elegans Hypothetical
           protein C46A5.5 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 360 IRLSKSDYDDRLHVDESYNCP 298
           +R   SD DDR+ VDE ++ P
Sbjct: 23  VRQKNSDIDDRISVDEDFSSP 43


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 583 NFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVD 696
           N   K+++   L +G++ + D NH  +L Q   DVI +
Sbjct: 503 NVQAKLLKVHVLVNGVSRNPDANHTKELFQLLEDVITE 540


>AC006692-8|AAF39973.1|  431|Caenorhabditis elegans Hypothetical
           protein T28F12.1 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -1

Query: 251 SILVNTNCRACTFYFNIYAAKPRKKKSLFHVIQLLK 144
           S+L  T    C  + ++ AAK ++ K +FH+++ ++
Sbjct: 101 SLLSTTGFSDCPDFCSVLAAKLKQPKEVFHILKFME 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,857
Number of Sequences: 27780
Number of extensions: 389062
Number of successful extensions: 1131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)