Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16f20
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.9  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   6.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = -3

Query: 444 VITYVHRIMHRSVPAELVPRLSEAVKKFIRLSKSDYDDRLHV-DESY--NCPRVIAEMYG 274
           V  Y H   HR          S +    + ++     DR  + +ESY     R I     
Sbjct: 25  VAGYKHSRRHRDFTVAESYDASSSNSDSLSMTIPPSIDRSSIHEESYLAESSRSIDPCAS 84

Query: 273 RFCGIGKE 250
           ++CGIGKE
Sbjct: 85  KYCGIGKE 92


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -3

Query: 111 DLKDVFDLLHAHSMSDKDKNSLMDLLC 31
           D+K + + ++A+  +DK +N L  ++C
Sbjct: 111 DVKMLSECINANKSTDKCENGLNFIIC 137


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 366 KFIRLSKSDYDDRLH 322
           K +R  ++DYD RLH
Sbjct: 107 KILRELQTDYDRRLH 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,993
Number of Sequences: 438
Number of extensions: 4622
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)