Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16f19
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 32 0.078
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 30 0.42
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 29 0.55
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 29 0.55
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 29 0.55
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 29 0.55
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 29 0.96
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 1.3
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 2.9
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 2.9
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 26 5.1
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 26 6.8
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc... 26 6.8
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 6.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 6.8
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 25 9.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 9.0
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 32.3 bits (70), Expect = 0.078
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -1
Query: 307 PSGREAVYALLGQLADGRSLTVLQYNKVIEYLQERRDHQVKLELGESSTAPVTATTNKTQ 128
PS E + LL ++ + + + L R H+ +L +SS P+T + N TQ
Sbjct: 2 PSKIEKICLLLLGFTAASNVNAYSHRRAGDTLHHRHKHEKHNDLTDSSYEPLTLSYNDTQ 61
Query: 127 VELQQR 110
++ QR
Sbjct: 62 IQQLQR 67
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 29.9 bits (64), Expect = 0.42
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = -1
Query: 394 GLPQEHRNMPIEDALQLLS 338
G+P +HR+ PIE++L++LS
Sbjct: 315 GIPSKHRDRPIEESLEILS 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.5 bits (63), Expect = 0.55
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 441 ITNIA*RHPLE-AMLPRTLPIGTSSIGNSRSTTIPNLLSLFSIYSAYSVRLFATTMI 608
+ N RH A T P+GT SI N++ + + N++ I + Y L T++
Sbjct: 297 VINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNIIFFRVIGAIYGTALILITIV 353
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.5 bits (63), Expect = 0.55
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 441 ITNIA*RHPLE-AMLPRTLPIGTSSIGNSRSTTIPNLLSLFSIYSAYSVRLFATTMI 608
+ N RH A T P+GT SI N++ + + N++ I + Y L T++
Sbjct: 297 VINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNIIFFRVIGAIYGTALILITIV 353
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.5 bits (63), Expect = 0.55
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 441 ITNIA*RHPLE-AMLPRTLPIGTSSIGNSRSTTIPNLLSLFSIYSAYSVRLFATTMI 608
+ N RH A T P+GT SI N++ + + N++ I + Y L T++
Sbjct: 297 VINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNIIFFRVIGAIYGTALILITIV 353
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.5 bits (63), Expect = 0.55
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 441 ITNIA*RHPLE-AMLPRTLPIGTSSIGNSRSTTIPNLLSLFSIYSAYSVRLFATTMI 608
+ N RH A T P+GT SI N++ + + N++ I + Y L T++
Sbjct: 297 VINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNIIFFRVIGAIYGTALILITIV 353
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 28.7 bits (61), Expect = 0.96
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -2
Query: 756 WGHDQEVQVSV-IDHPSIHQVNGLIGVVITDFQSPLSIHELCRYQKGMIVKSLLLRRVSQ 580
WG V V+ S G++ V+ TDF+ +H C ++ + L R
Sbjct: 44 WGRPMFVDVTWGAGGTSSELTPGIVNVIQTDFEVDTCMHLTCTNMSTEMIDAALKRAHET 103
Query: 579 NMRNILKI 556
RNIL +
Sbjct: 104 GCRNILAL 111
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -1
Query: 553 LKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAILVM-PMNLEHRSLTLTILHGLPQEH 377
++ +G VVD +F + D G G LYAI+ +N E + L + + E
Sbjct: 671 IRYIGDVVDAIFGILDAYHGYARLTEGLLGILYAIIKQESINGEEKKLIVGVEEDAMNED 730
Query: 376 RNMP---IEDALQLLSRN 332
+N P I + +QLL N
Sbjct: 731 KNKPCKKIREFVQLLLEN 748
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 548 FESIFNIFRIFCETLRNNNDFTIIPFWYRQSSWILRGLW 664
FE+ FNI R+ C + + T+I + S ++L +W
Sbjct: 272 FETSFNIIRLACRVIADIPQITLIFISFLFSFYVLIFIW 310
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 493 KVLGNIASRGCLYAILVMPMNLEHRSLTLTILHGLPQEHRNMPIEDALQLLSR 335
+ LGN+ S Y LVM M ++H L + EH +M ++ L+L+ R
Sbjct: 138 RFLGNLISAQSNYLPLVMTMLIQHMLYRPDSL-AIHYEHAHMALKYVLELVPR 189
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 259 GRSLTVLQYNKVIEYLQERRDHQVKLELG 173
G ++ QY +++ Y++ H KLE+G
Sbjct: 344 GAQVSKQQYERIVSYIESGIAHGAKLEIG 372
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 471 EAMLPRTLPIGTSSIGNSRSTT 536
EA+LP P+ T++ GN + T
Sbjct: 467 EALLPNAKPVKTATFGNGKKAT 488
>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 6.8
Identities = 7/28 (25%), Positives = 15/28 (53%)
Frame = -1
Query: 697 EWVDRSGYNRFPKPPEYPRTLPVPERND 614
+W+ + G +P +P+ +P P+ D
Sbjct: 15 QWLQKRGIGSLKRPYNFPKPVPGPKHKD 42
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -1
Query: 550 KRLGIVVDLLFPMEDVPIG---KVLGNIASRGCLYAILVMPMNLEHRSLTLTILHGLPQE 380
+R+ + +DL P G + LG + ++ L++ +++HR +L LP+E
Sbjct: 419 RRIVVAIDLWDASSRYPEGHFVRDLGEMETKEAETEALLLEYDVQHRPFPKAVLDCLPEE 478
Query: 379 HRNMPI 362
N +
Sbjct: 479 GHNWKV 484
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 742 RGPSFCDRPPI-NPSGEWVDRSGYNRFPKPPE 650
R PS P I NPSG + RS FP PP+
Sbjct: 423 RLPSLPSSPTIKNPSGLLLKRSNSIDFPTPPK 454
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 699 VNGLIGVVITDFQSPLSIHELCRYQKGMIVKSLLLRRVSQNMRNILKI-DSKDWV*SSI 526
+N + VV+T P I + +I+K + R S+ RN+ + SK+W S +
Sbjct: 1 MNDHLKVVVTILNLPTPISLAPYFTSSIILKYSMFRIASRQTRNLRALSSSKNWARSLV 59
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 489 TLPIGTSSIGNSRSTTIPNLLSLFSIYSA 575
+L + +S + +S S+ IP+ SL S YSA
Sbjct: 683 SLIVSSSPVASSSSSPIPSSSSLVSTYSA 711
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 277 LGQLADGRSLTVLQYNKVIEYLQERRDHQVKLELGESSTAPVTATTNKTQVE-LQQRIMN 101
LG+ +DG + T+ + E LQ D + SST P + T ++ L+ R +
Sbjct: 224 LGKFSDGETQTMPSLSPSTENLQINNDVTYQAATDNSSTFPGSVANELTPLQTLESRTAS 283
Query: 100 I 98
I
Sbjct: 284 I 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,900
Number of Sequences: 5004
Number of extensions: 68731
Number of successful extensions: 222
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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