Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16f19
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 31 1.3
09_04_0253 + 16116614-16116671,16117194-16117258,16117596-161176... 30 2.3
11_05_0087 + 18970741-18972702 29 4.1
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 29 5.4
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 29 5.4
12_02_0982 - 25031778-25032122,25032388-25032534,25032693-250337... 28 7.1
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 28 7.1
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 28 9.4
03_05_1006 + 29635372-29635442,29635544-29635589,29635672-296358... 28 9.4
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 717 HPSIHQVNGLIGVVITDFQSPLSIHELCRYQKGMIVKS 604
+P H +NGL+ V +DFQS ++ + ++ M+ S
Sbjct: 1055 YPESHNINGLVSEVRSDFQSAIASYRQAKFALDMMRNS 1092
>09_04_0253 +
16116614-16116671,16117194-16117258,16117596-16117663,
16120032-16120138,16120429-16120478,16120552-16120634,
16120708-16120800,16122349-16122379,16122428-16122521,
16122563-16122612
Length = 232
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 481 NIASRGCLYAILVMPMNLEHRSLTLTILHGLP 386
N A G +A + PMN+ H +TLTI P
Sbjct: 170 NFAVDGLAFAPQICPMNIGHNGMTLTIADSTP 201
>11_05_0087 + 18970741-18972702
Length = 653
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -2
Query: 756 WGHDQEVQVSVIDHPSIHQVNGLIGVVITDFQSPLSIHELCRYQKGMIVKSL 601
WG +V V+ HP+ +V L + P S E+ ++G SL
Sbjct: 205 WGRRHDVVAGVVSHPAARRVEELRVAAVRSADGPSSDREVTEMEEGEFHLSL 256
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 271 QLADGRSLTVLQYNKVIEYLQERRDHQVKLELGESSTAPVTATTNKT 131
QL G +T+ + +EYL+ERR + + E + P++ T KT
Sbjct: 168 QLGRGTKITLYLKDDQLEYLEERRLKDLVKKHSEFISYPISLWTEKT 214
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 271 QLADGRSLTVLQYNKVIEYLQERRDHQVKLELGESSTAPVTATTNKT 131
QL G +T+ + +EYL+ERR + + E + P++ T KT
Sbjct: 168 QLGRGTKITLYLKDDQLEYLEERRLKDLVKKHSEFISYPISLWTEKT 214
>12_02_0982 -
25031778-25032122,25032388-25032534,25032693-25033718,
25033758-25034227,25034393-25034471
Length = 688
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 637 LPVPERNDCEIIVVAKSLTEY 575
LP P R+DCE+ + SL EY
Sbjct: 14 LPSPRRSDCEVALEKNSLYEY 34
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 271 QLADGRSLTVLQYNKVIEYLQERRDHQVKLELGESSTAPVTATTNKT 131
QL G +T+ + +EYL+ERR + + E + P++ T KT
Sbjct: 168 QLGRGTKITLYLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKT 214
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = -3
Query: 197 PSSKTRI---GRIFDSSCDCNNKQNTS*TTAENYEHSQ*QERTDTASGTSCRSGSCKHDH 27
PS K R GR S+CD N +N H Q ++ D G C S H
Sbjct: 55 PSKKNRASKGGRKLISACDAANSENEVSQVVSGIPHDQ-KQSDDNVDGRPCNSIFSPAYH 113
Query: 26 RDDHC 12
C
Sbjct: 114 LQKEC 118
>03_05_1006 +
29635372-29635442,29635544-29635589,29635672-29635813,
29635878-29636653,29636750-29637370
Length = 551
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 250 VNGRQQVVRAEHILLHDRKDHRAGP 324
V GR R H L+HD +D+ +GP
Sbjct: 239 VEGRVHTERRLHQLMHDDRDYESGP 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,704,970
Number of Sequences: 37544
Number of extensions: 456737
Number of successful extensions: 1440
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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