Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16f19
(766 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL162458-1|CAH74052.1| 579|Homo sapiens nuclear receptor coacti... 90 7e-18
AL035662-2|CAI42972.1| 579|Homo sapiens nuclear receptor coacti... 90 7e-18
AF470686-1|AAO33457.1| 579|Homo sapiens estrogen receptor coact... 90 7e-18
AF230533-1|AAG36793.1| 621|Homo sapiens nuclear receptor coacti... 90 7e-18
AB046857-1|BAB13463.1| 479|Homo sapiens KIAA1637 protein protein. 90 7e-18
AY663390-1|AAU87043.1| 142|Homo sapiens CYP2D variant protein. 34 0.64
L04510-1|AAA35940.1| 574|Homo sapiens nucleotide binding protei... 30 7.9
BC022510-1|AAH22510.1| 574|Homo sapiens tripartite motif-contai... 30 7.9
AY296059-1|AAQ62697.1| 1494|Homo sapiens BCL9-2 protein. 30 7.9
AF230399-1|AAG50178.1| 546|Homo sapiens tripartite motif protei... 30 7.9
AF230398-1|AAG50177.1| 569|Homo sapiens tripartite motif protei... 30 7.9
AF230397-1|AAG50176.1| 574|Homo sapiens tripartite motif protei... 30 7.9
AB094091-1|BAC76045.1| 1499|Homo sapiens DLNB11 protein. 30 7.9
>AL162458-1|CAH74052.1| 579|Homo sapiens nuclear receptor
coactivator 5 protein.
Length = 579
Score = 90.2 bits (214), Expect = 7e-18
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = -1
Query: 616 DCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAILVMP 437
DC +IVV K +YAE + +++ LG+VVDL+F +V + + L +++ G +AI++
Sbjct: 199 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 258
Query: 436 MNLEHRSLTLTILHGLPQEHRNMPIEDALQLLSRNFQEVQRG-GPSGREAVYALLGQLAD 260
+ HRS T+ I+ G PQEHRNMP DA+ L++RN++ + RE + ++AD
Sbjct: 259 QHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMAD 318
>AL035662-2|CAI42972.1| 579|Homo sapiens nuclear receptor
coactivator 5 protein.
Length = 579
Score = 90.2 bits (214), Expect = 7e-18
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = -1
Query: 616 DCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAILVMP 437
DC +IVV K +YAE + +++ LG+VVDL+F +V + + L +++ G +AI++
Sbjct: 199 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 258
Query: 436 MNLEHRSLTLTILHGLPQEHRNMPIEDALQLLSRNFQEVQRG-GPSGREAVYALLGQLAD 260
+ HRS T+ I+ G PQEHRNMP DA+ L++RN++ + RE + ++AD
Sbjct: 259 QHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMAD 318
>AF470686-1|AAO33457.1| 579|Homo sapiens estrogen receptor
coactivator protein.
Length = 579
Score = 90.2 bits (214), Expect = 7e-18
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = -1
Query: 616 DCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAILVMP 437
DC +IVV K +YAE + +++ LG+VVDL+F +V + + L +++ G +AI++
Sbjct: 199 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 258
Query: 436 MNLEHRSLTLTILHGLPQEHRNMPIEDALQLLSRNFQEVQRG-GPSGREAVYALLGQLAD 260
+ HRS T+ I+ G PQEHRNMP DA+ L++RN++ + RE + ++AD
Sbjct: 259 QHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMAD 318
>AF230533-1|AAG36793.1| 621|Homo sapiens nuclear receptor
coactivator CIA protein.
Length = 621
Score = 90.2 bits (214), Expect = 7e-18
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = -1
Query: 616 DCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAILVMP 437
DC +IVV K +YAE + +++ LG+VVDL+F +V + + L +++ G +AI++
Sbjct: 241 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 300
Query: 436 MNLEHRSLTLTILHGLPQEHRNMPIEDALQLLSRNFQEVQRG-GPSGREAVYALLGQLAD 260
+ HRS T+ I+ G PQEHRNMP DA+ L++RN++ + RE + ++AD
Sbjct: 301 QHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMAD 360
>AB046857-1|BAB13463.1| 479|Homo sapiens KIAA1637 protein protein.
Length = 479
Score = 90.2 bits (214), Expect = 7e-18
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = -1
Query: 616 DCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAILVMP 437
DC +IVV K +YAE + +++ LG+VVDL+F +V + + L +++ G +AI++
Sbjct: 99 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 158
Query: 436 MNLEHRSLTLTILHGLPQEHRNMPIEDALQLLSRNFQEVQRG-GPSGREAVYALLGQLAD 260
+ HRS T+ I+ G PQEHRNMP DA+ L++RN++ + RE + ++AD
Sbjct: 159 QHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMAD 218
>AY663390-1|AAU87043.1| 142|Homo sapiens CYP2D variant protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.64
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 766 KGSVGARSRGPSFCDRPPINPSGEWVDRSGYNRFPKP 656
+G VG +RG C RPP PS W + FP P
Sbjct: 104 EGGVGLSARGAECCPRPPAYPSAGWQGPTLPKGFPDP 140
>L04510-1|AAA35940.1| 574|Homo sapiens nucleotide binding protein
protein.
Length = 574
Score = 30.3 bits (65), Expect = 7.9
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = -1
Query: 625 ERNDCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAIL 446
+++DC +++ + +T E ++ + ++ V D + +P+ N G I
Sbjct: 347 QQDDCRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIR 406
Query: 445 VMPMNLEHRSLTLTILHGLPQEHRNMPI 362
V+ + L+ T TIL L Q+ PI
Sbjct: 407 VVTLGLDGAGKT-TILFKLKQDEFMQPI 433
>BC022510-1|AAH22510.1| 574|Homo sapiens tripartite
motif-containing 23 protein.
Length = 574
Score = 30.3 bits (65), Expect = 7.9
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = -1
Query: 625 ERNDCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAIL 446
+++DC +++ + +T E ++ + ++ V D + +P+ N G I
Sbjct: 347 QQDDCRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIR 406
Query: 445 VMPMNLEHRSLTLTILHGLPQEHRNMPI 362
V+ + L+ T TIL L Q+ PI
Sbjct: 407 VVTLGLDGAGKT-TILFKLKQDEFMQPI 433
>AY296059-1|AAQ62697.1| 1494|Homo sapiens BCL9-2 protein.
Length = 1494
Score = 30.3 bits (65), Expect = 7.9
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 258 PSASCPSRAYTASRPEGPPRWTSWKLRDNSCNASSIG 368
P P A A PEGPP +S L NS A+S G
Sbjct: 304 PPPPAPGSAPPALPPEGPPEDSSQDLAPNSVGAASTG 340
>AF230399-1|AAG50178.1| 546|Homo sapiens tripartite motif protein
TRIM23 gamma protein.
Length = 546
Score = 30.3 bits (65), Expect = 7.9
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = -1
Query: 625 ERNDCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAIL 446
+++DC +++ + +T E ++ + ++ V D + +P+ N G I
Sbjct: 347 QQDDCRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIR 406
Query: 445 VMPMNLEHRSLTLTILHGLPQEHRNMPI 362
V+ + L+ T TIL L Q+ PI
Sbjct: 407 VVTLGLDGAGKT-TILFKLKQDEFMQPI 433
>AF230398-1|AAG50177.1| 569|Homo sapiens tripartite motif protein
TRIM23 beta protein.
Length = 569
Score = 30.3 bits (65), Expect = 7.9
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = -1
Query: 625 ERNDCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAIL 446
+++DC +++ + +T E ++ + ++ V D + +P+ N G I
Sbjct: 347 QQDDCRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIR 406
Query: 445 VMPMNLEHRSLTLTILHGLPQEHRNMPI 362
V+ + L+ T TIL L Q+ PI
Sbjct: 407 VVTLGLDGAGKT-TILFKLKQDEFMQPI 433
>AF230397-1|AAG50176.1| 574|Homo sapiens tripartite motif protein
TRIM23 alpha protein.
Length = 574
Score = 30.3 bits (65), Expect = 7.9
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = -1
Query: 625 ERNDCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAIL 446
+++DC +++ + +T E ++ + ++ V D + +P+ N G I
Sbjct: 347 QQDDCRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIR 406
Query: 445 VMPMNLEHRSLTLTILHGLPQEHRNMPI 362
V+ + L+ T TIL L Q+ PI
Sbjct: 407 VVTLGLDGAGKT-TILFKLKQDEFMQPI 433
>AB094091-1|BAC76045.1| 1499|Homo sapiens DLNB11 protein.
Length = 1499
Score = 30.3 bits (65), Expect = 7.9
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 258 PSASCPSRAYTASRPEGPPRWTSWKLRDNSCNASSIG 368
P P A A PEGPP +S L NS A+S G
Sbjct: 309 PPPPAPGSAPPALPPEGPPEDSSQDLAPNSVGAASTG 345
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,660,504
Number of Sequences: 237096
Number of extensions: 2537703
Number of successful extensions: 6375
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6370
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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