Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16f19
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-11|AAA82431.2| 550|Caenorhabditis elegans Hypothetical p... 33 0.29
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 2.7
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 2.7
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z72511-9|CAA96661.2| 223|Caenorhabditis elegans Hypothetical pr... 28 6.3
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 28 6.3
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF016655-9|AAK31440.1| 348|Caenorhabditis elegans Hypothetical ... 28 8.4
>U41264-11|AAA82431.2| 550|Caenorhabditis elegans Hypothetical
protein F10E7.1 protein.
Length = 550
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = -1
Query: 616 DCEIIVVAKSLTEYAEYIENRLKRLGIVVDLLFPMEDVPIGKVLGNIASRGCLYAILVMP 437
DC + T +A Y+ N + V D ++ + K+L N++ Y ++P
Sbjct: 27 DCTYVTALTFFTGFAMYLNN-FDPINAVFD-----NEIILDKILNNVSK----YVFPLIP 76
Query: 436 MNLEHRSLTLTILHGLPQEHRNMPIEDA 353
+ L +S +LH + ++HR + + A
Sbjct: 77 LRLIKKSFNEAVLHKIRKDHREVVLHTA 104
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 495 PIGTSSIGNSRSTTIPNLLSLFSIYSAY 578
P G SS+GN+ STT P+ S+ +Y Y
Sbjct: 2511 PPGFSSLGNASSTTNPSRTSMQQMYQQY 2538
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 495 PIGTSSIGNSRSTTIPNLLSLFSIYSAY 578
P G SS+GN+ STT P+ S+ +Y Y
Sbjct: 2533 PPGFSSLGNASSTTNPSRTSMQQMYQQY 2560
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 495 PIGTSSIGNSRSTTIPNLLSLFSIYSAY 578
P G SS+GN+ STT P+ S+ +Y Y
Sbjct: 1354 PPGFSSLGNASSTTNPSRTSMQQMYQQY 1381
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 495 PIGTSSIGNSRSTTIPNLLSLFSIYSAY 578
P G SS+GN+ STT P+ S+ +Y Y
Sbjct: 1332 PPGFSSLGNASSTTNPSRTSMQQMYQQY 1359
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 495 PIGTSSIGNSRSTTIPNLLSLFSIYSAY 578
P G SS+GN+ STT P+ S+ +Y Y
Sbjct: 2511 PPGFSSLGNASSTTNPSRTSMQQMYQQY 2538
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 495 PIGTSSIGNSRSTTIPNLLSLFSIYSAY 578
P G SS+GN+ STT P+ S+ +Y Y
Sbjct: 2533 PPGFSSLGNASSTTNPSRTSMQQMYQQY 2560
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -2
Query: 717 HPSIHQVNGLIGVVITDFQSPLSIHELCRYQKGMIVKSLLLRRVSQNMRNILKIDSKDWV 538
HP++ Q+ GL+ V++ + LSI +Q K +++ + + ++K + +
Sbjct: 986 HPTLQQMPGLVNVIVEHLYATLSIMYPAEFQLTEPGKPIIMDESKETVEKMMKAEKDGGI 1045
Query: 537 *SSI 526
S I
Sbjct: 1046 KSII 1049
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical protein
C01C7.1 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = -1
Query: 718 PPINPSGE---WVDRSGYNRFPKPPEYPRTLPVPERNDCEIIVVAKSLTEYAEYI---EN 557
PP++P+ +DRS + P PP P T P+ RN E I + KS E E++ EN
Sbjct: 866 PPMSPTSSRLSTLDRSSIS--PAPPR-PVTPPLSVRN--ETISMRKSQQEEMEHVTVEEN 920
Query: 556 RLKRLGIV 533
KR+ I+
Sbjct: 921 SPKRVHII 928
>Z72511-9|CAA96661.2| 223|Caenorhabditis elegans Hypothetical
protein F55A11.8 protein.
Length = 223
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 691 VDRSGYNRFPKPPEYPRTLPVPERNDCEIIVVAKSLTEYAE 569
+++SG+ P+P + L V E N+ + + + EYA+
Sbjct: 57 MNKSGHYVVPEPVAFEEVLTVQELNEVDAFIYGDDMFEYAD 97
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = -1
Query: 718 PPINPSGE---WVDRSGYNRFPKPPEYPRTLPVPERNDCEIIVVAKSLTEYAEYI---EN 557
PP++P+ +DRS + P PP P T P+ RN E I + KS E E++ EN
Sbjct: 866 PPMSPTSSRLSTLDRSSIS--PAPPR-PVTPPLSVRN--ETISMRKSQQEEMEHVTVEEN 920
Query: 556 RLKRLGIV 533
KR+ I+
Sbjct: 921 SPKRVHII 928
>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
protein B0240.3 protein.
Length = 1093
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = -1
Query: 436 MNLEHRSLTLTILHGLPQEHRNM--PIEDALQLLSRNFQEVQRGGPSGREAVYALLGQLA 263
+ E +SL + IL G P EH M + + Q L++N + RG G+ L +
Sbjct: 15 LTAEMQSLEINILKGYPYEHPTMIDMVTRSPQNLAQNLVSLLRGFEWGQVGA-VLCEECY 73
Query: 262 DGRSLTVLQYNKVIEYLQERRDHQVK 185
+G L Y IE + E + +K
Sbjct: 74 EGDELASEIYFSTIEDIFENNNIALK 99
>AF016655-9|AAK31440.1| 348|Caenorhabditis elegans Hypothetical
protein C17F4.5 protein.
Length = 348
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = -2
Query: 723 IDHPSIHQVNGLIGVVITDFQSPLSI-------HELCRYQKGMIVKSLLLRRVSQNMRNI 565
I PS H + LI +++ +Q PLSI E+ ++ + + VK+L L + N+ ++
Sbjct: 85 IREPSRHSMEDLISRLLSGYQEPLSIGLLLIPNSEVLKFPESLKVKALCL-TIQSNVASV 143
Query: 564 LKIDSK 547
+ SK
Sbjct: 144 MGSLSK 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,781,305
Number of Sequences: 27780
Number of extensions: 401808
Number of successful extensions: 1341
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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