Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16f17
         (815 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   463   e-130
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   463   e-130
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   463   e-130
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   463   e-130
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   463   e-130

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  463 bits (1142), Expect = e-130
 Identities = 213/260 (81%), Positives = 232/260 (89%)
 Frame = -1

Query: 815 LDAKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 636
           L  KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREH
Sbjct: 152 LGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREH 211

Query: 635 LEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPS 456
           LEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPS
Sbjct: 212 LEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 271

Query: 455 RVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGF 276
           RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGF
Sbjct: 272 RVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGF 331

Query: 275 PHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 96
           PHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQ
Sbjct: 332 PHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQ 391

Query: 95  TPADKAAFMGTLKKDRIREE 36
           TPADK AFMG LKKDR++EE
Sbjct: 392 TPADKLAFMGPLKKDRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  463 bits (1142), Expect = e-130
 Identities = 213/260 (81%), Positives = 232/260 (89%)
 Frame = -1

Query: 815 LDAKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 636
           L  KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREH
Sbjct: 141 LGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREH 200

Query: 635 LEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPS 456
           LEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPS
Sbjct: 201 LEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260

Query: 455 RVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGF 276
           RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGF
Sbjct: 261 RVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGF 320

Query: 275 PHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 96
           PHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQ
Sbjct: 321 PHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQ 380

Query: 95  TPADKAAFMGTLKKDRIREE 36
           TPADK AFMG LKKDR++EE
Sbjct: 381 TPADKLAFMGPLKKDRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  463 bits (1142), Expect = e-130
 Identities = 213/260 (81%), Positives = 232/260 (89%)
 Frame = -1

Query: 815 LDAKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 636
           L  KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREH
Sbjct: 128 LGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREH 187

Query: 635 LEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPS 456
           LEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPS
Sbjct: 188 LEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 247

Query: 455 RVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGF 276
           RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGF
Sbjct: 248 RVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGF 307

Query: 275 PHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 96
           PHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQ
Sbjct: 308 PHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQ 367

Query: 95  TPADKAAFMGTLKKDRIREE 36
           TPADK AFMG LKKDR++EE
Sbjct: 368 TPADKLAFMGPLKKDRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  463 bits (1142), Expect = e-130
 Identities = 213/260 (81%), Positives = 232/260 (89%)
 Frame = -1

Query: 815 LDAKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 636
           L  KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREH
Sbjct: 128 LGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREH 187

Query: 635 LEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPS 456
           LEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPS
Sbjct: 188 LEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 247

Query: 455 RVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGF 276
           RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGF
Sbjct: 248 RVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGF 307

Query: 275 PHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 96
           PHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQ
Sbjct: 308 PHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQ 367

Query: 95  TPADKAAFMGTLKKDRIREE 36
           TPADK AFMG LKKDR++EE
Sbjct: 368 TPADKLAFMGPLKKDRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  463 bits (1142), Expect = e-130
 Identities = 213/260 (81%), Positives = 232/260 (89%)
 Frame = -1

Query: 815 LDAKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 636
           L  KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREH
Sbjct: 141 LGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREH 200

Query: 635 LEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPS 456
           LEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPS
Sbjct: 201 LEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPS 260

Query: 455 RVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGF 276
           RVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGF
Sbjct: 261 RVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGF 320

Query: 275 PHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 96
           PHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQ
Sbjct: 321 PHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQ 380

Query: 95  TPADKAAFMGTLKKDRIREE 36
           TPADK AFMG LKKDR++EE
Sbjct: 381 TPADKLAFMGPLKKDRLKEE 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,724,220
Number of Sequences: 53049
Number of extensions: 827628
Number of successful extensions: 2296
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2296
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)