Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16f08
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 53 5e-08
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 34 0.019
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 33 0.057
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 32 0.075
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 31 0.17
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 29 0.70
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 29 0.92
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 29 0.92
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 28 1.2
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 27 2.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.8
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 27 3.7
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 26 6.5
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 8.6
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 25 8.6
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 52.8 bits (121), Expect = 5e-08
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Frame = -1
Query: 744 GRKMTLIIANCVTGISCLLIMVVPRSEVSNLILG--CSGLWGLSISFATVYLYAGELFPT 571
GRK TL ++ +TG+ + ++ SN LG C+ + I + +Y Y E+FP+
Sbjct: 435 GRKGTLCLSLILTGV---FLFASTTAKTSNAYLGWNCTFSFFSDIMYGVLYAYTPEVFPS 491
Query: 570 VVRNSGVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGIVPLIGAGLCILLP-DTRGK 394
VR + VGL+++ RI + +P +A + + P G + + L + P + RGK
Sbjct: 492 KVRGTAVGLAASANRILGIFSPVIAMRANLTTSAPIFVSGALFIFAGILVVFFPYEPRGK 551
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 34.3 bits (75), Expect = 0.019
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -1
Query: 609 ATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVA 508
AT +LY E+FP VR + GLS+ + + G+++A
Sbjct: 455 ATTFLYPAEVFPARVRGTAHGLSAALGKCGAILA 488
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 32.7 bits (71), Expect = 0.057
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -1
Query: 609 ATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGIVPLIGA 430
+T ++Y E+FP VR + G+S+ + + G+++A + + + + +
Sbjct: 467 STTFIYPAEVFPARVRGTAHGISAALGKCGAILASLLFNFLTSIIGYGNVMWIFCGCMWG 526
Query: 429 GL--CILLPDTRGK 394
G+ +LLP+T+G+
Sbjct: 527 GILFTLLLPETKGR 540
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 32.3 bits (70), Expect = 0.075
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = -1
Query: 744 GRKMTLIIANCVTGISCLLIMVVPRSEVSNLILGCSGLWGLSISFATVYLYAGELFPTVV 565
GRK TL+ A CV GI C L +G+ G ++ +TV + ++ P
Sbjct: 152 GRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARAIAGIGGGGMN-STVSILMSDIVPLKQ 210
Query: 564 RNSGVGLSSTVARIGSMV-APFVATLGHTSAWLPPLAFGI-VPLIG-AGLCI 418
R + G+ + IGS + P W + F I VPLI A LC+
Sbjct: 211 RGTYQGIINVFFAIGSSLGGPVGGYFADQYTW--RIGFLIQVPLIAIAFLCV 260
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -1
Query: 609 ATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVA 508
+T ++Y E+FP VR + G+S+ + + G+++A
Sbjct: 466 STTFIYPAEVFPARVRGTAHGVSAALGKCGAILA 499
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 29.1 bits (62), Expect = 0.70
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Frame = -1
Query: 744 GRKMTLIIANCVTGISCLLIMVVPRSEVSNLILGC-SGLWGLSISFATVYLYAGELFPTV 568
GR + + NC+T CL+I +P S ++G +W + S + L + +
Sbjct: 365 GRLLIGVFMNCLTLAGCLMIWKIPDSNPYGRLVGVWFTMWVPASSALLLSLISSNVAGYT 424
Query: 567 VRNSGVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGIVPLIGAGLCILL 412
+ +G++V+P + G T P GI +I LCI++
Sbjct: 425 KKTVTSATVFVFYSVGNIVSPQLFKSGQT----PEYIEGIQAMI-VSLCIII 471
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 28.7 bits (61), Expect = 0.92
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = +2
Query: 356 IHASPSSRVSGNFLPRVSGNKIHSPAPINGTIPKANGGSQALV*PRVA---TKGATIDPI 526
I ++P S S + + N+ +PAP + K++ S+ L P+ + T+ +
Sbjct: 403 ISSTPISAASKVRMNLMQSNQTPTPAPFSIAAKKSHLPSK-LSFPQDGGSLSSATTLQQL 461
Query: 527 -LATVDDNPTPEFLTTVGKSSPAYKYTVANEILSPQRPEQPNIKLLTSDR 673
A V N + +GK++P Y + + E+P +K+ TS R
Sbjct: 462 PKARVTPNVLSSLSSNLGKTNPTSVYQSKANVTTSADVEKPQVKVATSSR 511
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 28.7 bits (61), Expect = 0.92
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 639 SGLWGLSISFATVYLYAGELF-PTVVRNSGVGLSSTVARIGSMVAPFVATLGHTSAWL 469
+GL+ +S +YL G L P VV + V L S V+ I V+P + + WL
Sbjct: 415 TGLYYGQVSMGYLYLLMGVLVCPAVVPATCVMLFSRVSTIAVTVSPVLGIISSIITWL 472
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 539 DDNPTPEFLTTVGKSSPAYKYTVANEILSPQRPEQPNIKLLTSDR 673
DD P+P +G + + +E+L P++ N++L D+
Sbjct: 534 DDKPSPAAAEDIGTNGAIEEIPQVSEVLEPEKAHTTNLQLNALDK 578
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -1
Query: 744 GRKMTLIIANCVTGISCLLIMVVPRSEVSNLILGCS--GLWGLSISFATVYLYAGELFPT 571
GRK L I + S I V ++ +++ C G +G + V +++P
Sbjct: 202 GRKTPLYIGLFL--FSVFQIAVATAQDIQTIMI-CRFFGGYGACVPLCVVAAAFADMYPN 258
Query: 570 VVRNSGVGLSSTVARIGSMVAPFV 499
R + + + + V +G +VAP V
Sbjct: 259 RYRGTAITIFAAVIFVGPLVAPIV 282
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -1
Query: 717 NCVTGISCLLIMVVPRSEVSNLILGCSGLWGLSISFATVYLYAGELFPTVVRNSGVGLSS 538
N + I+C+ I+V RSE+S L G +I F ++L E F +VR + L+S
Sbjct: 3578 NSIGAINCVGIVVSGRSEISMDCLEVMGPLFNTIPF-PLFLEKDESFDCLVRRCQLTLAS 3636
Query: 537 TV 532
+
Sbjct: 3637 MI 3638
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 3.7
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Frame = -1
Query: 744 GRKMTLIIANCVTG-ISCLLIMVV-----PRSEVSNLILGCSGLWGLSISFAT-VYL--Y 592
GR++ L++ V G I+ L++ V P+ E N G S W + + + VY+ Y
Sbjct: 399 GRRILLLLT--VWGMIAALIVCAVAFHFLPKDENGNYTSGQSNAWAIVVLISMIVYVASY 456
Query: 591 AG----------ELFPTVVRNSGVGLSSTVARIGSM 514
A ELFP VR G G+S+ V G++
Sbjct: 457 ASGLGNLPWQQSELFPMSVRGLGTGMSTAVNWAGNL 492
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 585 ELFPTVVRNSGVGLSSTVARIGSMV 511
ELFP VR G G S+ + +G+++
Sbjct: 459 ELFPMEVRALGAGFSTAINWVGNLI 483
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 399 LVYQVIRYT-ALLQLTGQSQKPMVEAKRLCDLGSQQKAQ 512
+ YQ +R L+Q +KP+ E R CDL AQ
Sbjct: 167 VAYQYVRSAIGLIQNANIGKKPLPELTRWCDLAYSLYAQ 205
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 446 TIPKANGGSQALV*PRVATKGATIDPILATVDDNPTPEFLTTVGKSSPAYKY 601
T P N + +V AT A + ++D P+ F+T G+ SPA +Y
Sbjct: 836 TFPSDNCETNRVVICWGATLQAPHRAVRLQIEDLPSNVFVTNRGRGSPADQY 887
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,330
Number of Sequences: 5004
Number of extensions: 56860
Number of successful extensions: 162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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