Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16f08
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 85 6e-17
07_03_0898 - 22403337-22404950 71 7e-13
07_03_0896 + 22373348-22374946 68 9e-12
07_03_0899 + 22421038-22422642 66 2e-11
01_03_0126 + 12741397-12743022 66 3e-11
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 64 1e-10
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 60 2e-09
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 52 6e-07
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 52 6e-07
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 42 7e-04
04_04_0077 + 22568757-22568895,22568999-22569954,22570021-22570488 36 0.034
03_05_0545 + 25419031-25420758 33 0.24
03_02_0024 + 5079690-5081351 33 0.32
12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387 32 0.42
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 31 0.97
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 31 1.3
08_01_0552 - 4842417-4842632,4842878-4843378 30 2.2
04_01_0443 - 5776275-5777921 30 2.2
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 29 2.9
05_01_0370 + 2909216-2909797 29 2.9
04_01_0445 + 5812277-5813893 29 3.9
11_06_0262 + 21771577-21772059,21772167-21773252 29 5.2
03_01_0256 - 1992298-1993878 29 5.2
12_02_0008 + 12239759-12239923,12240404-12240443,12241278-122414... 28 6.8
08_02_1613 + 28236989-28238593 28 6.8
10_08_0182 + 15513693-15515273 28 9.0
03_01_0354 + 2785998-2787623 28 9.0
02_04_0611 + 24347384-24350015,24350126-24350497,24350561-243508... 28 9.0
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 85.0 bits (201), Expect = 6e-17
Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 6/133 (4%)
Frame = -1
Query: 744 GRKMTLIIANCVTGISCL---LIMVVPRSEVSNLILGCSGLWGLSISFATVYLYAGELFP 574
GRK I ++GISC LI V+ L G G++G++ ++ +++Y ELFP
Sbjct: 387 GRKPLAIGTMLLSGISCSAGSLIAGAGAMRVARLACGVVGIFGMAATYNLLFIYTAELFP 446
Query: 573 TVVRNSGVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGIVPLIGAGLCILLPDTRGK 394
T VRN+ +G +S +++G+++AP V LG +P FG+ L+G L LP+T+ K
Sbjct: 447 TAVRNAALGCTSQASQMGAILAPLVVVLGER---VPFALFGVSGLVGGFLVFCLPETKNK 503
Query: 393 KLPDT---LEEGE 364
+ DT LEEGE
Sbjct: 504 PMYDTMAGLEEGE 516
>07_03_0898 - 22403337-22404950
Length = 537
Score = 71.3 bits (167), Expect = 7e-13
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Frame = -1
Query: 741 RKMTLIIANCVTGISCLLIMVVPRSEVSN----LILGCSGLWGLSISFATVYLYAGELFP 574
R+ +L+ +G+ L +V+P E L + + +F + +Y+ ELFP
Sbjct: 386 RRSSLVALTAASGLCSLACVVIPDEEAGTGGLRLAAELASFFASCAAFDVMLMYSIELFP 445
Query: 573 TVVRNSGVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGIVPLIGA-GLCIL-LPDTR 400
T VRNS VGL A +G +VAP + LG ++ FG+ +G GL + LP+T+
Sbjct: 446 TSVRNSAVGLVRKAAVLGGVVAPMLVALGRERSYWSFGVFGLA--VGCLGLFVTWLPETK 503
Query: 399 GKKLPDTLEEGE 364
G++L DT+EE E
Sbjct: 504 GRRLSDTMEEEE 515
>07_03_0896 + 22373348-22374946
Length = 532
Score = 67.7 bits (158), Expect = 9e-12
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = -1
Query: 741 RKMTLIIANCVTGISCLLIMVVPRSEVSNLILGCSGLWGLSISFATVYLYAGELFPTVVR 562
R+ +++ G+ L + +P + + +F + +Y+ ELFPT VR
Sbjct: 389 RRSSVVALTAAAGVCSLACVAIPEGTGGRMAAEVLSFFATCTAFNIILMYSIELFPTSVR 448
Query: 561 NSGVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGI-VPLIGAGLCILLPDTRGKKLP 385
NS VG+ +G + AP + LG ++ FG+ V +G + LP+TRG+ +
Sbjct: 449 NSAVGMVRQALVLGGVAAPMLVALGRERSFWSFGVFGLAVGCLGL-FAVCLPETRGRSMS 507
Query: 384 DTLEEGE 364
DT+EE E
Sbjct: 508 DTMEEEE 514
>07_03_0899 + 22421038-22422642
Length = 534
Score = 66.5 bits (155), Expect = 2e-11
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Frame = -1
Query: 741 RKMTLIIANCVTGISCLLIMVVPRSEV----SNLILGC--SGLWGLSISFATVYLYAGEL 580
R+ +L+ +G+ L +V+P E S+L L + + ++ + +Y+ EL
Sbjct: 394 RRSSLVALTAASGLCSLACVVIPDPEAGAGGSHLRLAAELASFFASCAAYDVLLMYSIEL 453
Query: 579 FPTVVRNSGVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGIVPLIGA-GLCI-LLPD 406
FPT VRNS VGL +G +VAP + LG ++ FG+ +G GL + LP+
Sbjct: 454 FPTSVRNSAVGLVRQAGVLGGVVAPMLVALGRERSYWSFGVFGLT--VGCLGLFVTFLPE 511
Query: 405 TRGKKLPDTLEEGE 364
T+G++L DT+E+ E
Sbjct: 512 TKGRRLSDTMEDEE 525
>01_03_0126 + 12741397-12743022
Length = 541
Score = 66.1 bits (154), Expect = 3e-11
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = -1
Query: 699 SCLLIMVVPRSEVSNLILGCSGLWGLSISFATVYLYAGELFPTVVRNSGVGLSSTVARIG 520
+C+ +V+P + + + + + ++ + +Y ELFPT VRNS VGL +G
Sbjct: 410 ACVPAVVLP--DGARMAAEVASFFASCTAYDMMLMYTIELFPTSVRNSAVGLVRQAVALG 467
Query: 519 SMVAPFVATLGHTSAWLPPLAFGIVPL-IGA-GLCI-LLPDTRGKKLPDTLEEGEA 361
+VAP + LG + +FG+ L +G GL + LP+TRG++L DT+EE EA
Sbjct: 468 GVVAPVLVALGRETTSYWSSSFGVFGLAVGCLGLLVTCLPETRGRRLSDTMEEEEA 523
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 64.1 bits (149), Expect = 1e-10
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Frame = -1
Query: 744 GRKMTLIIANCVTGISCLLI--MVVPRSEVSNLILGCSGLWGLSISFATVYLYAGELFPT 571
GRK+++ + + ISCL I ++VP++E I +S SF +++YA E++PT
Sbjct: 310 GRKLSM---SSMLYISCLCIAPLMVPQTESLTTIFLFGARICISASFIVLHIYAPEIYPT 366
Query: 570 VVRNSGVGLSSTVARIGSMVAPFVAT-LGHTSAWLPPLAFGIVPLIGAGLCI-LLP-DTR 400
VR +GVG +S++AR G ++ P VA L H + I ++ +G+ + P +T
Sbjct: 367 AVRATGVGFASSIARFGGILCPLVAVGLVHACHQTAAILIFITVMLVSGVAVSYFPLETS 426
Query: 399 GKKLPD 382
G+KL D
Sbjct: 427 GRKLSD 432
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 60.1 bits (139), Expect = 2e-09
Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Frame = -1
Query: 744 GRKMTLIIANCVTGISCLLIMVVPRSEVSNLILGCSGLWGLSISFATVYLYAGELFPTVV 565
GRK+++ + T L ++ R+++ + +S SF VY+YA E++PT V
Sbjct: 398 GRKLSMA-SMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEIYPTSV 456
Query: 564 RNSGVGLSSTVARIGSMVAPFVA-TLGHTSAWLPPLAFGIVPLIGAGLCI-LLP-DTRGK 394
R +G+G++S+V RIG ++ P VA L H+ + + + +GL + P +T+G
Sbjct: 457 RTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGC 516
Query: 393 KLPDT 379
+L DT
Sbjct: 517 RLNDT 521
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Frame = -1
Query: 612 FATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPFV-ATLGHTSAWLPPLAF-GIVPL 439
FA +Y+Y E++P RN+GVG++S+ RIGS+V+P V +L + F ++
Sbjct: 429 FAVLYVYTPEIYPASSRNTGVGITSSFGRIGSIVSPVVTVSLSENCRQKEAVFFMDLMLF 488
Query: 438 IGAGLCILLP-DTRGKKL 388
+ A C L+P +T+G+++
Sbjct: 489 LAAVACALIPLETKGRQI 506
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = -1
Query: 615 SFATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPFVAT--LGHTSAWLPPLAFGIVP 442
SF + LYA E++PT R++GVG+++ + RIG +V P VA L L F +V
Sbjct: 596 SFTVLCLYAPEVYPTSARSTGVGIATAIGRIGGVVCPLVAVGMLRSCHQMEAILVFELVL 655
Query: 441 LIGAGLCILLP-DTRGK 394
+ C L P +T+G+
Sbjct: 656 FLAGVACFLFPIETKGR 672
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 41.5 bits (93), Expect = 7e-04
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Frame = -1
Query: 645 GCSGLWGLSISFA------TVYLYAGELFPTVVRNSGVGLSSTVARIGSMVA--PFVATL 490
G + ++GL+ FA T ++ E+FP +R++ G+S V +IG++V F+ T
Sbjct: 387 GFAVMYGLTFFFANFGPNTTTFIIPAEIFPARLRSTCHGISGAVGKIGAIVGVFGFLYTE 446
Query: 489 GHTSAWLPPLAFGIVPLIGAGLCILLPDTRGKKLPDTLEEGE 364
H +L L G L+G +LLP+++GK L D E E
Sbjct: 447 YHIRIFLFVL-IG-CNLVGFIFTLLLPESKGKSLEDLTGEIE 486
>04_04_0077 + 22568757-22568895,22568999-22569954,22570021-22570488
Length = 520
Score = 35.9 bits (79), Expect = 0.034
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Frame = -1
Query: 684 MVVPRS-EVSNLILGCSGLWGLSISFAT-VYLYAGELFPTVVRNSG--VGLSSTVARIGS 517
+ +PR+ V+ L+L C G +S+A +++ GE+FP VR++G V +S T+
Sbjct: 390 VAMPRAYSVALLVLTCVQGAGFGMSWAPLIWVIPGEIFPVEVRSAGQAVSVSVTLGLTFV 449
Query: 516 MVAPFVATLGHTSAWLPPLAFGIVPLIGAGLCILLPDTRGKKL 388
F+A L G V + A + + +P+T+G L
Sbjct: 450 QTQTFLALLCRLKYATFAYYAGWVAAMTAFVLVFMPETKGVPL 492
>03_05_0545 + 25419031-25420758
Length = 575
Score = 33.1 bits (72), Expect = 0.24
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = -1
Query: 663 VSNLILGCSGLWGLSISFATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPFVATLGH 484
VSN+ + G G A YAG LF TVV G+GLS T+A APF G
Sbjct: 459 VSNVAMALHGGAG-GAQTAVSGCYAGPLFNTVV---GLGLSLTLAAGSQYPAPFAIPAGG 514
Query: 483 TSAWLPPLAFGIVPLIGAGL--CILLPDTRGKKL 388
+ V +GAGL +L+ RG +L
Sbjct: 515 A-------VYEAVGFLGAGLAWALLVVPARGMRL 541
>03_02_0024 + 5079690-5081351
Length = 553
Score = 32.7 bits (71), Expect = 0.32
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = -1
Query: 600 YLYAGELFPTVVRNSGVGLSSTVARI--GSMVAPFVATL-GHTSAWLPPLAFGIVPLIGA 430
++Y+ E+FP +R G L + + R+ G++ F++ T A L GI
Sbjct: 444 WVYSSEIFPLRLRAQGCALGTAMNRVVSGAVSMSFISLYKAITFAGSFYLYAGIAAAGWV 503
Query: 429 GLCILLPDTRGKKLPDTLE 373
+ LP+T+G+ L DT++
Sbjct: 504 FMFFFLPETQGRSLEDTVK 522
>12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387
Length = 487
Score = 32.3 bits (70), Expect = 0.42
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -1
Query: 600 YLYAGELFPTVVRNSGVGLSSTVARI--GSMVAPFVATLGH-TSAWLPPLAFGIVPLIGA 430
++Y+ E+ P +R G G+ + + R+ G + F++ G T A L I
Sbjct: 404 WVYSSEILPLRLRGQGAGVGTAMNRVVSGVVTMTFISLYGAITMAGAFYLYAAIAAASFV 463
Query: 429 GLCILLPDTRGKKLPDTLE 373
+ LP+TRG+ L D E
Sbjct: 464 FIYACLPETRGRSLEDMEE 482
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 594 YAGELFPTVVRNSGVGLSSTVARI--GSMVAPFVATLGH-TSAWLPPLAFGIVPLIGAGL 424
Y E+ P +R G L V R+ G + F++ G T A L G+ + +
Sbjct: 396 YTAEIMPLRLRAQGASLGMAVNRLTCGVVSMTFISLAGGITMAGCFFLYAGVAAVACVFV 455
Query: 423 CILLPDTRGKKLPD 382
+ LP+TRG+ L D
Sbjct: 456 YVRLPETRGRSLED 469
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = -1
Query: 669 SEVSNLILGCSGLWGLS--ISFATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPFVA 496
S+ + ++L L+GL+ ++F T+ + + FPT R + VG+S +G++++ F+A
Sbjct: 211 SQSTIMLLAIRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLGNVIS-FLA 269
Query: 495 T 493
T
Sbjct: 270 T 270
>08_01_0552 - 4842417-4842632,4842878-4843378
Length = 238
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 555 GVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGIVPLIGAGLCILLPDTR 400
G L+S V IG A F T+ A PPL FG+ L+ GL + + R
Sbjct: 187 GGNLASAV--IGIAAASFAVTMLAAGAISPPLTFGLFVLLLGGLSLAVSGVR 236
>04_01_0443 - 5776275-5777921
Length = 548
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -1
Query: 609 ATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPF 502
+T ++ E+FP +R++ G+SS ++G++V F
Sbjct: 429 STTFIVPAEIFPARLRSTCHGISSAAGKMGAIVGSF 464
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -1
Query: 594 YAGELFPTVVRNSGVGLSSTVARI--GSMVAPFVATLGH-TSAWLPPLAFGIVPLIGAGL 424
Y E+ P +R G G+ V R+ G + F++ G T A + G +
Sbjct: 464 YGSEIMPLWLRAQGAGVGVAVNRVTCGVLSMTFISVAGGITMAGCFFVYAGAAVAAWVFV 523
Query: 423 CILLPDTRGKKLPD 382
+ LP+TRG+ L D
Sbjct: 524 YVRLPETRGRSLED 537
>05_01_0370 + 2909216-2909797
Length = 193
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 528 RIGSMVAPFVATLGHTSAWLPPLAFGI-VPLIGAGLC 421
R G+ +APFVA L AW PLA G+ P G C
Sbjct: 114 RPGATLAPFVAQLVAALAW-APLALGLAAPAAGLACC 149
>04_01_0445 + 5812277-5813893
Length = 538
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Frame = -1
Query: 609 ATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPF-------VATLGHTSAWLPPLAFG 451
+T ++ E+FP +R++ G+S+ + G++V F T A PP G
Sbjct: 420 STTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPP-GIG 478
Query: 450 I---------VPLIGAGLCILLPDTRGKKLPDTLEEGE 364
+ +IG L+P+++GK L + E E
Sbjct: 479 VRNSLFFLAGCNVIGFFFTFLVPESKGKSLEELSGENE 516
>11_06_0262 + 21771577-21772059,21772167-21773252
Length = 522
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -1
Query: 600 YLYAGELFPTVVRNSGVGLS-STVARIGSMVAP-FVATLGHTSAWLPPLAFGIVPLIGAG 427
+L E+ P VR++G ++ +T + +VA F+A L AW+ G + + A
Sbjct: 420 WLVPTEVLPLEVRSAGQSVAVATCFALTVLVAQCFLAALCRMKAWIFFFFAGWIAAMTAF 479
Query: 426 LCILLPDTRG 397
+ LP+T+G
Sbjct: 480 VYFFLPETKG 489
>03_01_0256 - 1992298-1993878
Length = 526
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Frame = -1
Query: 609 ATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPF-VATLGHTSAWLPPLAFGIVPLIG 433
AT ++ E++P +R + G+S+ ++G++V F L + A G P IG
Sbjct: 425 ATTFIVPAEIYPARLRATCHGISAASGKVGAIVGSFGFLYLAQSPVPAKAAAHGYPPGIG 484
Query: 432 --------AG-------LCILLPDTRGKKLPDTLEEGE 364
AG L L+P+ +GK L + E E
Sbjct: 485 VRNSLFALAGCSLLGFLLTFLVPEPKGKSLEEMSRENE 522
>12_02_0008 +
12239759-12239923,12240404-12240443,12241278-12241435,
12242400-12242462,12243149-12243268,12243388-12243684,
12245012-12245335,12246411-12246680
Length = 478
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 575 GKSSPAYKYTVANEILSPQRPEQP 646
G S P YTV E + P+RP+QP
Sbjct: 323 GGSVPVGVYTVQGENIFPERPDQP 346
>08_02_1613 + 28236989-28238593
Length = 534
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = -1
Query: 633 LWGLSISFA------TVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPF 502
L+GL+ FA T ++ E+FP +R + G+S+ ++G++V F
Sbjct: 411 LYGLTFFFANFGPNSTTFIVPAEIFPARLRATCHGISAASGKLGAIVGSF 460
>10_08_0182 + 15513693-15515273
Length = 526
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -1
Query: 609 ATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPF 502
AT ++ E++P +R++ G+S+ + G++V F
Sbjct: 424 ATTFIVPAEIYPARLRSTCHGISAAAGKAGAIVGAF 459
>03_01_0354 + 2785998-2787623
Length = 541
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -1
Query: 609 ATVYLYAGELFPTVVRNSGVGLSSTVARIGSMVAPF 502
AT ++ E+FP +R++ G+S+ + G+++ F
Sbjct: 423 ATTFIVPAEIFPARLRSTCHGISAASGKAGAIIGAF 458
>02_04_0611 +
24347384-24350015,24350126-24350497,24350561-24350805,
24350997-24351059,24351919-24352422
Length = 1271
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 561 NSGVGLSSTVARIGSMVAPFVATLGHTSAWLPPLAFGIVPL 439
NS +GL T+ I AP A GH S + +FGIV L
Sbjct: 863 NSSIGLKGTIGYI----APEYAQCGHASTYGDVYSFGIVLL 899
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,109,348
Number of Sequences: 37544
Number of extensions: 331495
Number of successful extensions: 858
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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