Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16f07
         (725 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130571-1|AAI30572.1|  376|Homo sapiens homeobox A2 protein.          37   0.085
AC004079-2|AAS00375.1|  376|Homo sapiens unknown protein.              37   0.085

>BC130571-1|AAI30572.1|  376|Homo sapiens homeobox A2 protein.
          Length = 376

 Score = 36.7 bits (81), Expect = 0.085
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = -1

Query: 368 DMVETDDKATFES--LFHLLNYVTSLEVNSDGQMLKLDEGDKI-EDFDESTLVGKALATS 198
           D+ E   K  F++  + H          NS+G+   L++ +K+ ED +E TL  +AL+ S
Sbjct: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS 240

Query: 197 SLYTRMEFMQYTFRQNTILSMNKKNNNFN 111
                 E   YTF+QN  LS  +  N  N
Sbjct: 241 GALLERE--GYTFQQNA-LSQQQAPNGHN 266


>AC004079-2|AAS00375.1|  376|Homo sapiens unknown protein.
          Length = 376

 Score = 36.7 bits (81), Expect = 0.085
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = -1

Query: 368 DMVETDDKATFES--LFHLLNYVTSLEVNSDGQMLKLDEGDKI-EDFDESTLVGKALATS 198
           D+ E   K  F++  + H          NS+G+   L++ +K+ ED +E TL  +AL+ S
Sbjct: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS 240

Query: 197 SLYTRMEFMQYTFRQNTILSMNKKNNNFN 111
                 E   YTF+QN  LS  +  N  N
Sbjct: 241 GALLERE--GYTFQQNA-LSQQQAPNGHN 266


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,400,271
Number of Sequences: 237096
Number of extensions: 1737168
Number of successful extensions: 3252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3252
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)