Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16f07
         (725 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113476-1|AAM29481.1|  367|Drosophila melanogaster RE43986p pro...    29   4.9  
AY060273-1|ABO52824.1|  271|Drosophila melanogaster GH10639p pro...    29   4.9  
AE013599-780|AAF58992.1|  367|Drosophila melanogaster CG13741-PA...    29   4.9  

>AY113476-1|AAM29481.1|  367|Drosophila melanogaster RE43986p
           protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 600 GSRGQRFDGNRVERVHYRGFVSLSQDARGHAPSR 701
           GS   R +GN V R      + LS  ARGH  SR
Sbjct: 112 GSATWRMNGNNVNRPSAAAQLGLSDQARGHVKSR 145


>AY060273-1|ABO52824.1|  271|Drosophila melanogaster GH10639p
           protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -3

Query: 618 NADHDCQSVNSNCYQSQLRHRHCAHFIDAGRF--GFGAMGPVRLQQHVSARVSR 463
           ++  DCQ +N  C Q Q  H   A  +  G F   F  +  V  +Q + A   R
Sbjct: 197 SSSSDCQVINGMCCQQQRLHHRAAIKLSCGYFRDAFDCVDMVGAEQSIDATEDR 250


>AE013599-780|AAF58992.1|  367|Drosophila melanogaster CG13741-PA
           protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 600 GSRGQRFDGNRVERVHYRGFVSLSQDARGHAPSR 701
           GS   R +GN V R      + LS  ARGH  SR
Sbjct: 112 GSATWRMNGNNVNRPSAAAQLGLSDQARGHVKSR 145


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,636,315
Number of Sequences: 53049
Number of extensions: 588748
Number of successful extensions: 1862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1862
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)