Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16f07
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    27   0.18 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           27   0.18 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.9  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 494 YNNMFPREFPDDMSRTFLTAYFES--LDNTTSREIIEFMPEFF 372
           YN   P+E   +++R     YFES  +D TT + +I+   + F
Sbjct: 374 YNYTIPKEKHVEVARLIRNYYFESNKIDETTLKHLIDVASDRF 416


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 494 YNNMFPREFPDDMSRTFLTAYFES--LDNTTSREIIEFMPEFF 372
           YN   P+E   +++R     YFES  +D TT + +I+   + F
Sbjct: 374 YNYTIPKEKHVEVARLIRNYYFESNKIDETTLKHLIDVASDRF 416


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 621 QNADHDCQSVNSNCYQSQLRHRHCAHFI 538
           Q      Q+  +   QSQ RH+H A  I
Sbjct: 776 QQVQQQMQAAMAAVQQSQQRHQHAAQMI 803


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 200 SSLYTRMEFMQYTFRQNTILSMNKKNNNFN 111
           SSL    ++  Y    N   + N  NNN+N
Sbjct: 316 SSLSNNYKYSNYNNYNNNYNNYNNYNNNYN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,274
Number of Sequences: 438
Number of extensions: 3889
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)